Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

34297535 .. 34298778

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGAGGTCCCGACTATTAAGAACAGCTTGTCGGAAGGCCGAGAGGGCTGGTTACAAGGCAATAGTCCTTACTGCCGACAGTCAAGGCTCGGGCGTAGGGACGCTGATATATCAAGAACAGCAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGTGGGCGGTAAAGGATTGGAAATGGTATACCCAACAACAACTTGACGAGGTGTGCATTGAAGTAGTCGACTACTTACTGATCTGCTGTAGATTCTCGACCAGTTTCTTGATTTTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

114

Amino Acids

12.95

Weight (kDa)

5.34

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	41 - 76	1.2e-11	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	251, 291
AciI	CCGC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	4 cut(s)	30, 143, 149, 179
AluI	AGCT	4 cut(s)	30, 143, 149, 179
Alw21I	GWGCWC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	150, 310
BfuI	GTATCC	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	116, 182
BsmFI	GGGAC	2 cut(s)	116, 182
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	303
BssNAI	GTATAC	1 cut(s)	252
Bst1107I	GTATAC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 149
BstSFI	CTRYAG	2 cut(s)	150, 310
BstV1I	GCAGC	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	8 cut(s)	30, 42, 51, 91, 143, 149, 179, 215
CviKI_1	RGCY	8 cut(s)	30, 42, 51, 91, 143, 149, 179, 215
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	113, 133, 137, 174, 195, 212, 252
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	2 cut(s)	116, 182
FatI	CATG	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	251, 291
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	42
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	315
Hpy166II	GTNNAC	2 cut(s)	252, 292
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	4 cut(s)	13, 117, 319, 331
Hpy8I	GTNNAC	2 cut(s)	252, 292
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	135, 152, 203, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 149
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	146, 176
LpnPI	CCDG	5 cut(s)	37, 129, 138, 213, 337
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	2 cut(s)	40, 265
Mph1103I	ATGCAT	1 cut(s)	137
MseI	TTAA	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	48, 149
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	68, 160
NsiI	ATGCAT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	12, 32, 131, 145, 151, 181, 276
SfcI	CTRYAG	2 cut(s)	150, 310
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	291, 320
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseI	GCWGC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	10
XmiI	GTMKAC	2 cut(s)	251, 291
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.