Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

15791533 .. 15816567

Gene Structure 25035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGACTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCGCTGTCAGATACCTTCGGTGAATCAAGAGACTGGCATTCGAGGAACTGAACCAAATGAAACTCTGAAGAAATTTCGATCCGATGCAATTGTGTATCCATCTCGGAAACAGCGGAGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTACAGGAGATATGAAGGGAAATGTCGTGAAAGTTGGAGATCTTGTTTATGTCCTCAAGATGTTTGAAATCTTATCACCATCTGTAAAACCAGTTCTAAAAAAGCACCACTATGATGCAATACTGATAAGCAAAGTTTTTCCTCATAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

282

Amino Acids

31.96

Weight (kDa)

8.44

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC	PF03473	79 - 212	1.3e-21	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	139, 561, 660
AciI	CCGC	2 cut(s)	439, 550
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	4 cut(s)	32, 147, 329, 524
AfaI	GTAC	2 cut(s)	9, 321
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	3 cut(s)	57, 419, 761
AluBI	AGCT	2 cut(s)	95, 161
AluI	AGCT	2 cut(s)	95, 161
Alw26I	GTCTC	3 cut(s)	279, 461, 681
AlwI	GGATC	1 cut(s)	510
ApeKI	GCWGC	3 cut(s)	77, 158, 423
ApoI	RAATTY	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	469, 762
AvaII	GGWCC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	64, 170, 410
BccI	CCATC	3 cut(s)	41, 544, 781
BciVI	GTATCC	2 cut(s)	283, 543
BcoDI	GTCTC	3 cut(s)	279, 461, 681
BfaI	CTAG	3 cut(s)	135, 171, 578
BfuI	GTATCC	2 cut(s)	283, 543
BglII	AGATCT	2 cut(s)	634, 733
BisI	GCNGC	3 cut(s)	78, 159, 424
BlsI	GCNGC	3 cut(s)	79, 160, 425
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	213, 315
BmsI	GCATC	6 cut(s)	88, 110, 290, 313, 511, 799
BoxI	GACNNNNGTC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	734
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	475, 785
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	475, 785
BseXI	GCAGC	3 cut(s)	64, 170, 410
BseYI	CCCAGC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	3 cut(s)	279, 461, 681
BsmBI	CGTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	515, 634, 733
BspACI	CCGC	2 cut(s)	439, 550
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	213, 315
BspPI	GGATC	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	475, 785
BssMI	GATC	3 cut(s)	515, 634, 733
Bst4CI	ACNGT	3 cut(s)	186, 332, 359
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	428, 604
BstDEI	CTNAG	2 cut(s)	82, 276
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	518, 637, 736
BstMAI	GTCTC	3 cut(s)	279, 461, 681
BstMBI	GATC	3 cut(s)	515, 634, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 432
BstNSI	RCATGY	1 cut(s)	430
BstPAI	GACNNNNGTC	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	64, 170, 410
BstX2I	RGATCY	2 cut(s)	634, 733
BstYI	RGATCY	2 cut(s)	634, 733
BsuI	GTATCC	2 cut(s)	283, 543
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	428, 604
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	8, 320
CviAII	CATG	5 cut(s)	241, 427, 644, 655, 846
CviJI	RGCY	2 cut(s)	95, 161
CviKI_1	RGCY	2 cut(s)	95, 161
CviQI	GTAC	2 cut(s)	8, 320
DdeI	CTNAG	2 cut(s)	82, 276
DpnI	GATC	3 cut(s)	517, 636, 735
DpnII	GATC	3 cut(s)	515, 634, 733
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	4 cut(s)	32, 147, 329, 524
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT22I	ATGCAT	2 cut(s)	103, 847
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	5 cut(s)	244, 430, 647, 658, 849
FatI	CATG	5 cut(s)	240, 426, 643, 654, 845
FblI	GTMKAC	3 cut(s)	139, 561, 660
Fnu4HI	GCNGC	3 cut(s)	78, 159, 424
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	78, 159, 424
FspBI	CTAG	3 cut(s)	135, 171, 578
GluI	GCNGC	3 cut(s)	78, 159, 424
GsaI	CCCAGC	1 cut(s)	228
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	244, 430, 647, 658, 849
HincII	GTYRAC	2 cut(s)	140, 355
HindII	GTYRAC	2 cut(s)	140, 355
HinfI	GANTC	6 cut(s)	25, 196, 460, 590, 673, 689
HphI	GGTGA	2 cut(s)	469, 762
Hpy166II	GTNNAC	6 cut(s)	29, 140, 355, 365, 562, 661
Hpy188III	TCNNGA	3 cut(s)	464, 721, 751
Hpy8I	GTNNAC	6 cut(s)	29, 140, 355, 365, 562, 661
HpyAV	CCTTC	5 cut(s)	304, 462, 549, 604, 703
HpyCH4III	ACNGT	3 cut(s)	186, 332, 359
HpyCH4V	TGCA	7 cut(s)	101, 158, 426, 524, 585, 812, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 432
HpyF3I	CTNAG	2 cut(s)	82, 276
Hsp92II	CATG	5 cut(s)	244, 430, 647, 658, 849
Kzo9I	GATC	3 cut(s)	515, 634, 733
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	3 cut(s)	64, 170, 410
LweI	GCATC	6 cut(s)	88, 110, 290, 313, 511, 799
MaeI	CTAG	3 cut(s)	135, 171, 578
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	3 cut(s)	517, 636, 735
MboI	GATC	3 cut(s)	515, 634, 733
MboII	GAAGA	5 cut(s)	25, 389, 517, 629, 632
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	634, 733
MluCI	AATT	4 cut(s)	324, 406, 509, 525
MlyI	GAGTC	4 cut(s)	34, 190, 584, 683
MmeI	TCCRAC	3 cut(s)	273, 610, 709
MnlI	CCTC	5 cut(s)	82, 473, 659, 758, 846
Mph1103I	ATGCAT	2 cut(s)	103, 847
MseI	TTAA	2 cut(s)	153, 327
MslI	CAYNNNNRTG	4 cut(s)	106, 418, 804, 807
MspA1I	CMGCKG	2 cut(s)	441, 550
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	278, 432
NdeII	GATC	3 cut(s)	515, 634, 733
NlaIII	CATG	5 cut(s)	244, 430, 647, 658, 849
NlaIV	GGNNCC	2 cut(s)	213, 315
NsiI	ATGCAT	2 cut(s)	103, 847
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	460, 673
PkrI	GCNGC	3 cut(s)	79, 160, 425
PleI	GAGTC	4 cut(s)	33, 190, 584, 683
PpsI	GAGTC	4 cut(s)	33, 190, 584, 683
PpuMI	RGGWCCY	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	213, 315
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsrI	GAACNNNNNNTAC	2 cut(s)	771, 803
PsuI	RGATCY	2 cut(s)	634, 733
RsaI	GTAC	2 cut(s)	9, 321
RsaNI	GTAC	2 cut(s)	8, 320
RseI	CAYNNNNRTG	4 cut(s)	106, 418, 804, 807
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	153, 327
SatI	GCNGC	3 cut(s)	78, 159, 424
Sau3AI	GATC	3 cut(s)	515, 634, 733
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	4 cut(s)	34, 190, 584, 683
SetI	ASST	9 cut(s)	97, 136, 163, 178, 208, 217, 255, 454, 630
SfaNI	GCATC	6 cut(s)	88, 110, 290, 313, 511, 799
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	4 cut(s)	106, 418, 804, 807
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	4 cut(s)	324, 406, 509, 525
SsiI	CCGC	2 cut(s)	439, 550
SspMI	CTAG	3 cut(s)	135, 171, 578
TaaI	ACNGT	3 cut(s)	186, 332, 359
TaqI	TCGA	3 cut(s)	139, 478, 514
TasI	AATT	4 cut(s)	324, 406, 509, 525
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	460, 673
Tru1I	TTAA	2 cut(s)	153, 327
Tru9I	TTAA	2 cut(s)	153, 327
TseI	GCWGC	3 cut(s)	77, 158, 423
TspDTI	ATGAA	3 cut(s)	510, 632, 722
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	3 cut(s)	139, 561, 660
XspI	CTAG	3 cut(s)	135, 171, 578
Zsp2I	ATGCAT	2 cut(s)	103, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.