Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000791.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

160831 .. 162654

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000791.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaatactgtgcttattgttcaggtgttcaaagacaggaatctggttacacagcttgtcagaagggctgagagggctggttacaaggcaatagtcctcactgctgacactccgaggctcgggcgtagggaggctgatatcaagaacagaccaattaatgattctggattagcatcatatgttgctggactaattgaccgctctctcagctggaaggatgtgaaatggcttcagactatcactacattaccaattctcataaagggtgtaattactgccgaggatacaaggttatgcatacaagctggagctgcaggaataattgtatccaatcatggagctgcaggaataattgtatccaatcatgtagctcggcaactagattatgtccctgcaactattatggctttggaagaggtcgtcagagctgcagagagtcaaattcctgtttttctggatggtggtgtgaggcgaggaacagatgtttttaaagctttggttcttggcgcatcgggtgtatttattggtagaccagtggtgttctcattagctgctgccggtgaggctggtgtaaggaaagtgcttcaaatgctccgtgatgaacttgagctaacaatggcattaagtggttgctgctcgctaaaggagataaggcgtgaccacattgtggcagaatgggacgctcctcgtattgctgccagattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

235

Amino Acids

25.49

Weight (kDa)

9.46

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	667
AfiI	CCNNNNNNNGG	2 cut(s)	119, 667
AgsI	TTSAA	2 cut(s)	31, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	7 cut(s)	311, 341, 428, 551, 554, 633, 695
ApoI	RAATTY	1 cut(s)	441
AseI	ATTAAT	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	7 cut(s)	298, 328, 415, 538, 541, 620, 682
BccI	CCATC	1 cut(s)	452
BciVI	GTATCC	3 cut(s)	277, 337, 367
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	3 cut(s)	312, 342, 429
BfuI	GTATCC	3 cut(s)	277, 337, 367
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	7 cut(s)	312, 342, 429, 552, 555, 634, 696
BlsI	GCNGC	7 cut(s)	313, 343, 430, 553, 556, 635, 697
BmeT110I	CYCGRG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	182, 518
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	113, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 667
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	113, 279
BseGI	GGATG	2 cut(s)	223, 463
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	119, 667
BseMII	CTCAG	2 cut(s)	60, 220
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	7 cut(s)	298, 328, 415, 538, 541, 620, 682
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	2 cut(s)	374, 692
BslI	CCNNNNNNNGG	2 cut(s)	119, 667
BsmFI	GGGAC	2 cut(s)	374, 692
BsoBI	CYCGRG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	61, 219
BspMAI	CTGCAG	3 cut(s)	316, 346, 433
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	113, 279
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	2 cut(s)	69, 206
BstF5I	GGATG	2 cut(s)	223, 463
BstHHI	GCGC	1 cut(s)	509
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 207, 311, 563, 589
BstSFI	CTRYAG	3 cut(s)	312, 342, 429
BstV1I	GCAGC	7 cut(s)	298, 328, 415, 538, 541, 620, 682
BsuI	GTATCC	3 cut(s)	277, 337, 367
BtsCI	GGATG	2 cut(s)	223, 463
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 540
Cac8I	GCNNGC	1 cut(s)	638
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	557
CseI	GACGC	1 cut(s)	689
CviAII	CATG	2 cut(s)	335, 365
DdeI	CTNAG	2 cut(s)	69, 206
DraI	TTTAAA	1 cut(s)	490
DraIII	CACNNNGTG	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	299
FaeI	CATG	2 cut(s)	338, 368
FaiI	YATR	9 cut(s)	178, 180, 260, 295, 299, 336, 366, 387, 404
FaqI	GGGAC	2 cut(s)	374, 692
FatI	CATG	2 cut(s)	334, 364
FauNDI	CATATG	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	7 cut(s)	312, 342, 429, 552, 555, 634, 696
FokI	GGATG	2 cut(s)	230, 470
Fsp4HI	GCNGC	7 cut(s)	312, 342, 429, 552, 555, 634, 696
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	7 cut(s)	312, 342, 429, 552, 555, 634, 696
GsuI	CTGGAG	1 cut(s)	327
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	338, 368
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	40, 161, 436
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	62, 114, 234, 425
Hpy188III	TCNNGA	3 cut(s)	142, 165, 455
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	57, 208
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	5 cut(s)	297, 314, 344, 395, 431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 207, 311, 563, 589
HpyF3I	CTNAG	2 cut(s)	69, 206
Hsp92II	CATG	2 cut(s)	338, 368
HspAI	GCGC	1 cut(s)	507
LmnI	GCTCC	4 cut(s)	308, 338, 597, 688
Lsp1109I	GCAGC	7 cut(s)	298, 328, 415, 538, 541, 620, 682
LweI	GCATC	2 cut(s)	182, 518
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	46, 80, 656
MbiI	CCGCTC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	425
MluCI	AATT	7 cut(s)	153, 192, 252, 270, 321, 351, 441
MlyI	GAGTC	1 cut(s)	445
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	3 cut(s)	156, 489, 623
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	74, 207, 311, 563, 589
NdeI	CATATG	1 cut(s)	178
NlaIII	CATG	2 cut(s)	338, 368
NmeAIII	GCCGAG	2 cut(s)	304, 352
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	40, 161
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	7 cut(s)	313, 343, 430, 553, 556, 635, 697
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	156
PstI	CTGCAG	3 cut(s)	316, 346, 433
PvuII	CAGCTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	156, 489, 623
SatI	GCNGC	7 cut(s)	312, 342, 429, 552, 555, 634, 696
SchI	GAGTC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	182, 518
SfcI	CTRYAG	3 cut(s)	312, 342, 429
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	7 cut(s)	153, 192, 252, 270, 321, 351, 441
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	7 cut(s)	153, 192, 252, 270, 321, 351, 441
TfiI	GAWTC	2 cut(s)	40, 161
Tru1I	TTAA	3 cut(s)	156, 489, 623
Tru9I	TTAA	3 cut(s)	156, 489, 623
TscAI	CASTG	2 cut(s)	106, 540
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	7 cut(s)	311, 341, 428, 551, 554, 633, 695
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	2 cut(s)	17, 615
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	106, 540
Van91I	CCANNNNNTGG	1 cut(s)	667
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.