Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

18861385 .. 18861793

Gene Structure 409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 126 bp

ATGGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTACATATACGCTTCATTTATCTTTCTGATTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

41

Amino Acids

4.55

Weight (kDa)

5.3

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	2 - 31	1.5e-10	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	90
AluBI	AGCT	2 cut(s)	11, 41
AluI	AGCT	2 cut(s)	11, 41
Alw21I	GWGCWC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	4 cut(s)	5, 11, 41, 77
CviKI_1	RGCY	4 cut(s)	5, 11, 41, 77
CviQI	GTAC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	1 cut(s)	38
FaiI	YATR	5 cut(s)	36, 57, 74, 93, 95
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	50
FspEI	CC	8 cut(s)	21, 28, 43, 59, 65, 71, 74, 75
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	14, 65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	8, 38
LpnPI	CCDG	1 cut(s)	75
MaeI	CTAG	1 cut(s)	50
MboII	GAAGA	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	13, 43, 90
SfcI	CTRYAG	1 cut(s)	12
SgeI	CNNG	6 cut(s)	18, 27, 47, 54, 62, 74
Sse9I	AATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	43
TasI	AATT	1 cut(s)	21
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	91
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.