RLG00000008546

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000887
Physical Location & Seq
Forward (+)
31840657 .. 31842332
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008546

Sequence Viewer

Length: 360 bp
ATGATATGGGTGGGCCTCCCAGCCCTGTTGGGTCTGAAGAAAGCTCCTTCGGTGGGTCCTGGTTGGGAGGGTGGGTTGGGAAAGGCAAAGAGCCTGAGAATTTGGGGTAGGCGGGCTGGGAGTGGAGCTCGGTGGAGGCAGGTTAGTTGGAAATTGGATCGGAGTTGGGTTGGTCAGAGCTGGAATTGGGGTTGGGGAACTGGAACAGGGAGCTGTGGGAGAGTTGATGAGACGCTGATATGGAAATCTGGAAGTCGTCCATCCCCGATTGGCCATTATTCTGCAGATAATGTCCTCGGGCTTTTCCGGGCTAAGAACCCGACGCAGCTGCCTGGGTCTCGGGGTTTGCTGGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.92

Weight (kDa)

11.23

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AciI CCGC 1 cut(s) 112
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 2 cut(s) 58, 331
AluBI AGCT 5 cut(s) 44, 128, 180, 213, 328
AluI AGCT 5 cut(s) 44, 128, 180, 213, 328
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 224, 342
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 2 cut(s) 296, 339
AoxI GGCC 2 cut(s) 13, 271
ApeKI GCWGC 2 cut(s) 325, 328
ApoI RAATTY 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 13, 56
AsuC2I CCSGG 1 cut(s) 308
AvaI CYCGRG 2 cut(s) 296, 339
AvaII GGWCC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 273
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 315, 337
BccI CCATC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 2 cut(s) 60, 333
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 224, 342
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 326, 329
BlsI GCNGC 2 cut(s) 327, 330
Bme1390I CCNGG 3 cut(s) 60, 308, 333
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 2 cut(s) 296, 339
BmgT120I GGNCC 2 cut(s) 13, 56
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 3 cut(s) 60, 308, 333
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpuMI CCSGG 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 295, 332
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 60, 333
BseDI CCNNGG 2 cut(s) 295, 332
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 315, 337
BseYI CCCAGC 2 cut(s) 19, 116
BshFI GGCC 2 cut(s) 15, 273
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 2 cut(s) 296, 339
BsiSI CCGG 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 224, 342
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 15, 273
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 2 cut(s) 296, 339
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 15, 273
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 295, 332
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 60, 333
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 95, 312
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 224, 342
BstMBI GATC 1 cut(s) 157
BstNI CCWGG 2 cut(s) 60, 333
BstSCI CCNGG 3 cut(s) 58, 306, 331
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 315, 337
BsuRI GGCC 2 cut(s) 15, 273
BtsCI GGATG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 13, 56
CseI GACGC 2 cut(s) 241, 331
DdeI CTNAG 2 cut(s) 95, 312
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 2 cut(s) 296, 339
EcoICRI GAGCTC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 58, 331
EcoT38I GRGCYC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 224
FaiI YATR 2 cut(s) 7, 241
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 326, 329
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 326, 329
GluI GCNGC 2 cut(s) 326, 329
GsaI CCCAGC 2 cut(s) 23, 120
HaeIII GGCC 2 cut(s) 15, 273
HapII CCGG 1 cut(s) 307
HgaI GACGC 2 cut(s) 241, 331
HpaII CCGG 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 36, 162, 177
Hpy188III TCNNGA 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 95, 312
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 3 cut(s) 49, 125, 210
Lsp1109I GCAGC 2 cut(s) 315, 337
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 3 cut(s) 99, 152, 184
MluNI TGGCCA 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 4 cut(s) 26, 61, 129, 305
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 3 cut(s) 60, 308, 333
MvaI CCWGG 2 cut(s) 60, 333
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 327, 330
PpuMI RGGWCCY 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 58, 331
PspFI CCCAGC 2 cut(s) 19, 116
PspGI CCWGG 2 cut(s) 58, 331
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 13, 56
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 328
SacI GAGCTC 1 cut(s) 130
SatI GCNGC 2 cut(s) 326, 329
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 13, 56
ScrFI CCNGG 3 cut(s) 60, 308, 333
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 46, 130, 144, 182, 215, 330
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 56
Sse9I AATT 3 cut(s) 99, 152, 184
SsiI CCGC 1 cut(s) 112
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 3 cut(s) 58, 306, 331
TaqI TCGA 1 cut(s) 354
TasI AATT 3 cut(s) 99, 152, 184
TseI GCWGC 2 cut(s) 325, 328
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.