Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

3205740 .. 3206994

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTTGTTTTGTTGCGGATTCTTAACCTTGTTATAGACACTGTCCACTGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACTTGGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGCGCAGGGACGTTGATATCAAGAACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAATTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTATGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTTGAAGGATGTGAAATGGCTTCAGTCAATCACTACATTACCAATTCAGAGTTTCCTGCTAAGTTATTCTGTTTTAATAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

140

Amino Acids

16.01

Weight (kDa)

9.92

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	28 - 128	9.9e-19	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	330
AciI	CCGC	2 cut(s)	16, 328
AclWI	GGATC	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	247, 256
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	67, 97, 244, 254, 343
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	247, 256
AspLEI	GCGC	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	126, 349
BseNI	ACTGG	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	2 cut(s)	16, 328
BspCNI	CTCAG	2 cut(s)	127, 348
BspPI	GGATC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	135, 335, 398, 420
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 336
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	39, 46, 165
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviJI	RGCY	7 cut(s)	52, 121, 134, 143, 184, 339, 358
CviKI_1	RGCY	7 cut(s)	52, 121, 134, 143, 184, 339, 358
DdeI	CTNAG	4 cut(s)	135, 335, 398, 420
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaiI	YATR	5 cut(s)	35, 224, 294, 307, 309
FaqI	GGGAC	1 cut(s)	209
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	307
FokI	GGATG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	19, 106
Hpy166II	GTNNAC	2 cut(s)	46, 219
Hpy188I	TCNGA	2 cut(s)	128, 387
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	46, 219
HpyAV	CCTTC	2 cut(s)	123, 337
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 336
HpyF3I	CTNAG	4 cut(s)	135, 335, 398, 420
HpySE526I	ACGT	1 cut(s)	198
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	262
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	112, 146
MalI	GATC	1 cut(s)	264
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	4 cut(s)	54, 247, 256, 381
MnlI	CCTC	3 cut(s)	87, 132, 173
MseI	TTAA	2 cut(s)	24, 413
MwoI	GCNNNNNNNGC	2 cut(s)	140, 336
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	19, 106
PflFI	GACNNNGTC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	24, 413
Sau3AI	GATC	1 cut(s)	262
SetI	ASST	4 cut(s)	30, 201, 218, 341
SfaNI	GCATC	1 cut(s)	311
Sse9I	AATT	4 cut(s)	54, 247, 256, 381
SsiI	CCGC	2 cut(s)	16, 328
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	201
TasI	AATT	4 cut(s)	54, 247, 256, 381
TfiI	GAWTC	2 cut(s)	19, 106
Tru1I	TTAA	2 cut(s)	24, 413
Tru9I	TTAA	2 cut(s)	24, 413
TscAI	CASTG	3 cut(s)	46, 53, 172
TspRI	CASTG	3 cut(s)	46, 53, 172
Tth111I	GACNNNGTC	1 cut(s)	41
XapI	RAATTY	2 cut(s)	247, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.