Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003517.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

47790 .. 54361

Gene Structure 6572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003517.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgttgattttaagctacactactagaataatgtcattagacatcgccactattaaatcggcgtcggacaaccccatgagggaaatcaaggtccagaagctcgtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaaggtctttggagcaactcagtggccagacccctctcggtacactgtgaggtctttcggtattcaggagcctatcgatcttggaattaacattgaagaagttgcctcaacaggacctggtattcacttgttccaactctatgtgttcaaagacaggaatctggttacacggcttgtcagaagggctgagagggctggttataaggcaatagtcctcactactgacactccaaggctcgggcgcagggacgctgatatcaagaacagtttttctctccaaaaccctagaaagcgggtttcgcctcctgctgaaagttttgctcgtccggctgtgttccggcttcggcactggcttagccttgtcaatgttgtgaagttgccggacgggtgcagatggtcaagggctgatttggcttttggcgggcggtgcctggtgttgacagcggtggtagacatggtttggatttcacttggcggcttgggcgttttagctgttgacgatgtccttgttggtggtgtcacggtagtgatggcagtctttgaggcggggaggtggtggtttccctttcgctcacggcggtgcggtagtagcttcatttccggcggcggtttcgctcgtttgtctaaccaagcacatggaagggaggctgaattgggtcaggccaagctggttgggctggctgctatcttccattgggccaatgggctgctgctaggtctttgcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0008891 GO:0009853 GO:0009987 GO:0010109 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0019048 GO:0019222 GO:0031323 GO:0035821 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051701 GO:0051704 GO:0051817 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

293

Amino Acids

32.27

Weight (kDa)

10.16

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	579
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	603
AcoI	YGGCCR	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	79, 389
AgsI	TTSAA	2 cut(s)	248, 301
AjnI	CCWGG	2 cut(s)	268, 582
AleI	CACNNNNGTG	2 cut(s)	677, 730
AluBI	AGCT	5 cut(s)	15, 100, 644, 744, 820
AluI	AGCT	5 cut(s)	15, 100, 644, 744, 820
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	4 cut(s)	147, 176, 813, 849
ApeKI	GCWGC	3 cut(s)	833, 859, 862
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	91, 266, 849
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	91, 266
BalI	TGGCCA	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	820, 846, 849
BccI	CCATC	2 cut(s)	540, 676
BceAI	ACGGC	2 cut(s)	338, 743
BciT130I	CCWGG	2 cut(s)	270, 584
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	4 cut(s)	24, 438, 866, 880
BisI	GCNGC	7 cut(s)	130, 150, 628, 757, 834, 860, 863
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	7 cut(s)	131, 151, 629, 758, 835, 861, 864
Bme1390I	CCNGG	2 cut(s)	270, 584
Bme18I	GGWCC	2 cut(s)	91, 266
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	91, 266, 849
BmiI	GGNNCC	2 cut(s)	222, 581
BmrFI	CCNGG	2 cut(s)	270, 584
Bpu1102I	GCTNAGC	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	144, 153, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 389
Bse1I	ACTGG	1 cut(s)	506
BseBI	CCWGG	2 cut(s)	270, 584
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	3 cut(s)	144, 153, 383
BseLI	CCNNNNNNNGG	2 cut(s)	79, 389
BseMII	CTCAG	2 cut(s)	185, 330
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	820, 846, 849
BsgI	GTGCAG	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	149, 178, 815, 851
BshNI	GGYRCC	1 cut(s)	579
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	4 cut(s)	479, 490, 533, 753
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	79, 389
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	149, 178, 815, 851
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	133, 229
Bsp1720I	GCTNAGC	1 cut(s)	506
BspANI	GGCC	4 cut(s)	149, 178, 815, 851
BspCNI	CTCAG	2 cut(s)	184, 331
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	222, 581
BspT107I	GGYRCC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	3 cut(s)	144, 153, 383
BssMI	GATC	2 cut(s)	133, 229
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	3 cut(s)	144, 153, 383
Bst2UI	CCWGG	2 cut(s)	270, 584
Bst4CI	ACNGT	3 cut(s)	199, 419, 676
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	575, 831
BstDEI	CTNAG	3 cut(s)	171, 339, 506
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	136, 232
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	133, 229
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	9 cut(s)	129, 344, 451, 479, 563, 579, 633, 741, 826
BstNI	CCWGG	2 cut(s)	270, 584
BstSCI	CCNGG	2 cut(s)	268, 582
BstV1I	GCAGC	3 cut(s)	820, 846, 849
BstXI	CCANNNNNNTGG	1 cut(s)	788
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	149, 178, 815, 851
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	179, 195, 499
Cac8I	GCNNGC	2 cut(s)	575, 831
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	91, 266, 849
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	2 cut(s)	51, 410
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	76, 607, 788
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	171, 339, 506
DpnI	GATC	2 cut(s)	135, 231
DpnII	GATC	2 cut(s)	133, 229
EaeI	YGGCCR	1 cut(s)	176
Eco130I	CCWWGG	3 cut(s)	144, 153, 383
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	91, 266
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	268, 582
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	3 cut(s)	144, 153, 383
ErhI	CCWWGG	3 cut(s)	144, 153, 383
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	79, 610, 791
FaiI	YATR	5 cut(s)	77, 294, 354, 608, 789
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	75, 606, 787
FauI	CCCGC	3 cut(s)	438, 566, 691
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	7 cut(s)	130, 150, 628, 757, 834, 860, 863
Fsp4HI	GCNGC	7 cut(s)	130, 150, 628, 757, 834, 860, 863
FspBI	CTAG	4 cut(s)	24, 438, 866, 880
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	7 cut(s)	130, 150, 628, 757, 834, 860, 863
HaeIII	GGCC	4 cut(s)	149, 178, 815, 851
HapII	CCGG	4 cut(s)	479, 490, 533, 753
HgaI	GACGC	2 cut(s)	51, 410
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	79, 610, 791
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	2 cut(s)	591, 649
HindII	GTYRAC	2 cut(s)	591, 649
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	4 cut(s)	479, 490, 533, 753
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	195, 591, 604, 649
Hpy188I	TCNGA	2 cut(s)	67, 332
Hpy188III	TCNNGA	3 cut(s)	94, 218, 412
Hpy8I	GTNNAC	4 cut(s)	195, 591, 604, 649
Hpy99I	CGWCG	2 cut(s)	67, 122
HpyAV	CCTTC	2 cut(s)	327, 786
HpyCH4III	ACNGT	3 cut(s)	199, 419, 676
HpyCH4V	TGCA	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	9 cut(s)	129, 344, 451, 479, 563, 579, 633, 741, 826
HpyF3I	CTNAG	3 cut(s)	171, 339, 506
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	79, 610, 791
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	133, 229
LmnI	GCTCC	2 cut(s)	164, 220
Lsp1109I	GCAGC	3 cut(s)	820, 846, 849
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	4 cut(s)	24, 438, 866, 880
MaeIII	GTNAC	2 cut(s)	316, 670
MalI	GATC	2 cut(s)	135, 231
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	2 cut(s)	133, 229
MboII	GAAGA	2 cut(s)	260, 832
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	2 cut(s)	237, 803
MluNI	TGGCCA	1 cut(s)	178
MmeI	TCCRAC	2 cut(s)	45, 310
Mox20I	TGGCCA	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	178
MseI	TTAA	3 cut(s)	11, 54, 240
MslI	CAYNNNNRTG	2 cut(s)	677, 730
Msp20I	TGGCCA	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	4 cut(s)	479, 490, 533, 753
MspR9I	CCNGG	2 cut(s)	270, 584
MvaI	CCWGG	2 cut(s)	270, 584
MwoI	GCNNNNNNNGC	9 cut(s)	129, 344, 451, 479, 563, 579, 633, 741, 826
NdeII	GATC	2 cut(s)	133, 229
NlaIII	CATG	3 cut(s)	79, 610, 791
NlaIV	GGNNCC	2 cut(s)	222, 581
NmuCI	GTSAC	1 cut(s)	670
OliI	CACNNNNGTG	2 cut(s)	677, 730
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	7 cut(s)	131, 151, 629, 758, 835, 861, 864
Ple19I	CGATCG	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	268, 582
PspGI	CCWGG	2 cut(s)	268, 582
PspN4I	GGNNCC	2 cut(s)	222, 581
PspPI	GGNCC	3 cut(s)	91, 266, 849
PspPPI	RGGWCCY	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	677, 730
SaqAI	TTAA	3 cut(s)	11, 54, 240
SatI	GCNGC	7 cut(s)	130, 150, 628, 757, 834, 860, 863
Sau3AI	GATC	2 cut(s)	133, 229
Sau96I	GGNCC	3 cut(s)	91, 266, 849
ScrFI	CCNGG	2 cut(s)	270, 584
SexAI	ACCWGGT	1 cut(s)	268
SinI	GGWCC	2 cut(s)	91, 266
SmiMI	CAYNNNNRTG	2 cut(s)	677, 730
Sse9I	AATT	2 cut(s)	237, 803
SspMI	CTAG	4 cut(s)	24, 438, 866, 880
StyD4I	CCNGG	2 cut(s)	268, 582
StyI	CCWWGG	3 cut(s)	144, 153, 383
TaaI	ACNGT	3 cut(s)	199, 419, 676
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	237, 803
TauI	GCSGC	4 cut(s)	132, 152, 630, 759
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	11, 54, 240
Tru9I	TTAA	3 cut(s)	11, 54, 240
TscAI	CASTG	3 cut(s)	179, 202, 506
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	3 cut(s)	833, 859, 862
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	1 cut(s)	736
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	179, 202, 506
Tth111I	GACNNNGTC	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	91, 266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	4 cut(s)	24, 438, 866, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.