Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022708.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

4330 .. 9719

Gene Structure 5390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022708.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgagggcggcacgggatggttgtggcaacgtgggcgtcatctcgggaggtcagtttggcgtactgggattcaaaagatcttggtttgattctggattcagattgggctgcttcaaggcgtcggagaaccccatgagggaaatcaaggtccagaagcttgtcctcaacatctccgaagacgagagcggcgatcgtctcaccaaggccgccaaggtctttggagcaactcagtggccagacccctattttctccaaaggtctcggtacactgtgaggtctttcggtattcaggagcctatcgatcttggaattaagaatctggttacatggcttgtcagaagggctgagagggctagttacaaggaaatagtcctcactgctgacactccaaggctcgggtgcagggacgctgatatcaagaacagtggccatggtgtacctagaaacggggcgggggtggcacacttgctgctagcggtggcggtggatcgcatgcggtgtgcgtgtggcatgtttgcacagggatggcgcatcaatgtcactcttccaggtgtgggaggacgagactttggtcttgagcgaggtggtggtgatttggttggagatgagtacagcttagattttttggggctgagattgaggtcggcgtgtctgctgtgtagctgcgtcggggcttgtagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

227

Amino Acids

24.76

Weight (kDa)

9.28

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	186
AciI	CCGC	7 cut(s)	8, 186, 207, 452, 476, 482, 496
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	233, 427
AcyI	GRCGYC	2 cut(s)	36, 119
AfaI	GTAC	4 cut(s)	63, 266, 438, 611
AfiI	CCNNNNNNNGG	4 cut(s)	136, 395, 446, 554
AgsI	TTSAA	2 cut(s)	73, 115
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	3 cut(s)	157, 615, 663
AluI	AGCT	3 cut(s)	157, 615, 663
Alw26I	GTCTC	3 cut(s)	200, 264, 558
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	2 cut(s)	43, 395
AoxI	GGCC	3 cut(s)	204, 233, 427
ApeKI	GCWGC	3 cut(s)	108, 469, 663
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	190, 602
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	2 cut(s)	43, 395
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	2 cut(s)	235, 429
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	95, 456, 650
BccI	CCATC	2 cut(s)	11, 519
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	200, 264, 558
BfaI	CTAG	3 cut(s)	354, 441, 473
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	6 cut(s)	9, 109, 187, 207, 470, 664
BlsI	GCNGC	6 cut(s)	10, 110, 188, 208, 471, 665
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	2 cut(s)	43, 395
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	540
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	74
BoxI	GACNNNNGTC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	300
BsaHI	GRCGYC	2 cut(s)	36, 119
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	201, 210, 389, 430
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 395, 446, 554
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	201, 210, 389, 430
BseGI	GGATG	2 cut(s)	22, 530
BseLI	CCNNNNNNNGG	4 cut(s)	136, 395, 446, 554
BseMII	CTCAG	3 cut(s)	242, 336, 623
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	95, 456, 650
BsgI	GTGCAG	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	206, 235, 429
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	193
BsiHKCI	CYCGRG	2 cut(s)	43, 395
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	136, 395, 446, 554
BsmAI	GTCTC	3 cut(s)	200, 264, 558
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	206, 235, 429
Bso31I	GGTCTC	1 cut(s)	264
BsoBI	CYCGRG	2 cut(s)	43, 395
Bsp143I	GATC	4 cut(s)	77, 190, 301, 487
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	7 cut(s)	8, 186, 207, 452, 476, 482, 496
BspANI	GGCC	3 cut(s)	206, 235, 429
BspCNI	CTCAG	3 cut(s)	241, 337, 624
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	294
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	4 cut(s)	201, 210, 389, 430
BssMI	GATC	4 cut(s)	77, 190, 301, 487
BssNI	GRCGYC	2 cut(s)	36, 119
BssT1I	CCWWGG	4 cut(s)	201, 210, 389, 430
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	271, 425
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	2 cut(s)	36, 119
BstC8I	GCNNGC	2 cut(s)	474, 494
BstDEI	CTNAG	4 cut(s)	228, 345, 616, 632
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	22, 530
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	80, 193, 304, 490
BstMAI	GTCTC	3 cut(s)	200, 264, 558
BstMBI	GATC	4 cut(s)	77, 190, 301, 487
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 350, 458
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	496, 514
BstPAI	GACNNNNGTC	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	95, 456, 650
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	206, 235, 429
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	22, 530
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	4 cut(s)	236, 267, 375, 430
Cac8I	GCNNGC	2 cut(s)	474, 494
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	4 cut(s)	25, 108, 416, 655
Csp6I	GTAC	4 cut(s)	62, 265, 437, 610
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	5 cut(s)	133, 327, 431, 493, 511
CviQI	GTAC	4 cut(s)	62, 265, 437, 610
DdeI	CTNAG	4 cut(s)	228, 345, 616, 632
DpnI	GATC	4 cut(s)	79, 192, 303, 489
DpnII	GATC	4 cut(s)	77, 190, 301, 487
EaeI	YGGCCR	2 cut(s)	233, 427
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	4 cut(s)	201, 210, 389, 430
Eco31I	GGTCTC	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	43, 395
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	4 cut(s)	201, 210, 389, 430
ErhI	CCWWGG	4 cut(s)	201, 210, 389, 430
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	5 cut(s)	136, 330, 434, 496, 514
FaiI	YATR	5 cut(s)	134, 328, 432, 494, 512
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	5 cut(s)	132, 326, 430, 492, 510
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	6 cut(s)	9, 109, 187, 207, 470, 664
FokI	GGATG	2 cut(s)	29, 537
Fsp4HI	GCNGC	6 cut(s)	9, 109, 187, 207, 470, 664
FspBI	CTAG	3 cut(s)	354, 441, 473
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	6 cut(s)	9, 109, 187, 207, 470, 664
HaeIII	GGCC	3 cut(s)	206, 235, 429
HgaI	GACGC	4 cut(s)	25, 108, 416, 655
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	2 cut(s)	36, 119
Hin1II	CATG	5 cut(s)	136, 330, 434, 496, 514
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	69, 89, 96, 316
HphI	GGTGA	2 cut(s)	190, 602
Hpy166II	GTNNAC	2 cut(s)	267, 437
Hpy188I	TCNGA	4 cut(s)	101, 124, 175, 338
Hpy188III	TCNNGA	6 cut(s)	45, 93, 151, 290, 418, 575
Hpy8I	GTNNAC	2 cut(s)	267, 437
Hpy99I	CGWCG	2 cut(s)	124, 671
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	271, 425
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	402, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 350, 458
HpyF3I	CTNAG	4 cut(s)	228, 345, 616, 632
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	2 cut(s)	36, 119
Hsp92II	CATG	5 cut(s)	136, 330, 434, 496, 514
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	77, 190, 301, 487
LmnI	GCTCC	2 cut(s)	221, 292
Lsp1109I	GCAGC	3 cut(s)	95, 456, 650
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	3 cut(s)	354, 441, 473
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	322, 356, 538
MalI	GATC	4 cut(s)	79, 192, 303, 489
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	4 cut(s)	77, 190, 301, 487
MboII	GAAGA	2 cut(s)	188, 536
MflI	RGATCY	1 cut(s)	77
MlsI	TGGCCA	2 cut(s)	235, 429
MluCI	AATT	1 cut(s)	309
MluNI	TGGCCA	2 cut(s)	235, 429
MmeI	TCCRAC	2 cut(s)	102, 580
MnlI	CCTC	9 cut(s)	41, 129, 173, 267, 342, 383, 551, 575, 633
Mox20I	TGGCCA	2 cut(s)	235, 429
MscI	TGGCCA	2 cut(s)	235, 429
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	523
Msp20I	TGGCCA	2 cut(s)	235, 429
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	33, 350, 458
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	4 cut(s)	77, 190, 301, 487
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	136, 330, 434, 496, 514
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	2 cut(s)	496, 514
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	69, 89, 96, 316
PkrI	GCNGC	6 cut(s)	10, 110, 188, 208, 471, 665
Ple19I	CGATCG	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	4 cut(s)	63, 266, 438, 611
RsaNI	GTAC	4 cut(s)	62, 265, 437, 610
RseI	CAYNNNNRTG	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	6 cut(s)	9, 109, 187, 207, 470, 664
Sau3AI	GATC	4 cut(s)	77, 190, 301, 487
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	7 cut(s)	8, 186, 207, 452, 476, 482, 496
SspMI	CTAG	3 cut(s)	354, 441, 473
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	4 cut(s)	201, 210, 389, 430
TaaI	ACNGT	2 cut(s)	271, 425
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	3 cut(s)	11, 189, 209
TfiI	GAWTC	4 cut(s)	69, 89, 96, 316
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	4 cut(s)	236, 274, 382, 430
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	108, 469, 663
Tsp45I	GTSAC	1 cut(s)	538
TspRI	CASTG	4 cut(s)	236, 274, 382, 430
VpaK11BI	GGWCC	1 cut(s)	148
XceI	RCATGY	2 cut(s)	496, 514
XspI	CTAG	3 cut(s)	354, 441, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.