Rh1AG036800

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000887
Physical Location & Seq
Forward (+)
6463637 .. 6465905
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG036800.1

Sequence Viewer

Length: 663 bp
ATGTTTGCTTTCATGGTTGTCTTTTGTCTTGTATTATCAGCCTTACCAATTAATACTGTGCTTATTGTTCAGGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAAGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGTGCAAGGACGCTGATATTAAGAACAGGTTTACTATGCCACCAAGTTTGAAATTGAAAAACTTCAAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCTGCTCTCTCAGCTGGAAGGGATCTGTCATTCGCTTTTCAGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACTTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGTTAACAATTGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

220

Amino Acids

24.3

Weight (kDa)

9.22

Isoelectric Point (pI)

23.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 22 - 108 1.1e-12 FMN-dependent dehydrogenase
MOSC_N PF03476 117 - 167 3.7e-07 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 505
AclWI GGATC 2 cut(s) 252, 337
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 398, 513
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 6 cut(s) 79, 220, 226, 235, 423, 584
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 321, 461, 527
AluI AGCT 3 cut(s) 321, 461, 527
Alw26I GTCTC 3 cut(s) 257, 567, 645
AlwI GGATC 2 cut(s) 252, 337
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 443, 524
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 167
BbvI GCAGC 2 cut(s) 430, 536
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 3 cut(s) 257, 567, 645
BfaI CTAG 2 cut(s) 501, 537
BisI GCNGC 2 cut(s) 444, 525
BlsI GCNGC 2 cut(s) 445, 526
Bme1390I CCNGG 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 3 cut(s) 293, 454, 476
BsaBI GATNNNNATC 1 cut(s) 283
BsaI GGTCTC 2 cut(s) 257, 567
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 283
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 376
BseJI GATNNNNATC 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 3 cut(s) 108, 331, 656
BseXI GCAGC 2 cut(s) 430, 536
BseYI CCCAGC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 257, 567, 645
BsmBI CGTCTC 1 cut(s) 645
Bso31I GGTCTC 2 cut(s) 257, 567
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 2 cut(s) 244, 329
BspCNI CTCAG 3 cut(s) 109, 330, 655
BspPI GGATC 2 cut(s) 252, 337
BspTNI GGTCTC 2 cut(s) 257, 567
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 2 cut(s) 244, 329
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 58, 552
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 117, 317, 448, 642
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 2 cut(s) 247, 332
BstMAI GTCTC 3 cut(s) 257, 567, 645
BstMBI GATC 2 cut(s) 244, 329
BstMWI GCNNNNNNNGC 2 cut(s) 122, 318
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 430, 536
BstX2I RGATCY 2 cut(s) 244, 329
BstYI RGATCY 2 cut(s) 244, 329
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 310
CseI GACGC 2 cut(s) 188, 627
Csp6I GTAC 1 cut(s) 374
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 3 cut(s) 13, 367, 607
CviJI RGCY 8 cut(s) 41, 103, 116, 125, 166, 321, 461, 527
CviKI_1 RGCY 8 cut(s) 41, 103, 116, 125, 166, 321, 461, 527
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 4 cut(s) 117, 317, 448, 642
DpnI GATC 2 cut(s) 246, 331
DpnII GATC 2 cut(s) 244, 329
Eco130I CCWWGG 1 cut(s) 161
Eco31I GGTCTC 2 cut(s) 257, 567
Eco57I CTGAAG 2 cut(s) 398, 513
Eco88I CYCGRG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 3 cut(s) 16, 370, 610
FatI CATG 3 cut(s) 12, 366, 606
FauNDI CATATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 444, 525
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 444, 525
FspBI CTAG 2 cut(s) 501, 537
GluI GCNGC 2 cut(s) 444, 525
GsaI CCCAGC 1 cut(s) 594
HgaI GACGC 2 cut(s) 188, 627
Hin1II CATG 3 cut(s) 16, 370, 610
HincII GTYRAC 2 cut(s) 506, 648
HindII GTYRAC 2 cut(s) 506, 648
HinfI GANTC 4 cut(s) 88, 272, 391, 657
HpaI GTTAAC 1 cut(s) 648
Hpy166II GTNNAC 4 cut(s) 201, 395, 506, 648
Hpy188I TCNGA 4 cut(s) 110, 484, 532, 616
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 4 cut(s) 201, 395, 506, 648
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 58, 552
HpyCH4V TGCA 3 cut(s) 174, 467, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 318
HpyF3I CTNAG 4 cut(s) 117, 317, 448, 642
Hsp92II CATG 3 cut(s) 16, 370, 610
KspAI GTTAAC 1 cut(s) 648
Kzo9I GATC 2 cut(s) 244, 329
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 2 cut(s) 430, 536
LweI GCATC 3 cut(s) 293, 454, 476
MaeI CTAG 2 cut(s) 501, 537
MaeIII GTNAC 2 cut(s) 94, 128
MalI GATC 2 cut(s) 246, 331
MboI GATC 2 cut(s) 244, 329
MboII GAAGA 1 cut(s) 391
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 2 cut(s) 244, 329
MluCI AATT 4 cut(s) 48, 221, 238, 651
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 3 cut(s) 114, 155, 448
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 5 cut(s) 51, 189, 353, 519, 647
MslI CAYNNNNRTG 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 122, 318
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 244, 329
NlaIII CATG 3 cut(s) 16, 370, 610
NsiI ATGCAT 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 88, 272, 657
PkrI GCNGC 2 cut(s) 445, 526
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 244, 329
PvuII CAGCTG 1 cut(s) 321
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 472
SalI GTCGAC 1 cut(s) 504
SaqAI TTAA 5 cut(s) 51, 189, 353, 519, 647
SatI GCNGC 2 cut(s) 444, 525
Sau3AI GATC 2 cut(s) 244, 329
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 363
SfaNI GCATC 3 cut(s) 293, 454, 476
SmiMI CAYNNNNRTG 1 cut(s) 472
Sse9I AATT 4 cut(s) 48, 221, 238, 651
SspMI CTAG 2 cut(s) 501, 537
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 58, 552
TaqI TCGA 1 cut(s) 505
TasI AATT 4 cut(s) 48, 221, 238, 651
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 3 cut(s) 88, 272, 657
Tru1I TTAA 5 cut(s) 51, 189, 353, 519, 647
Tru9I TTAA 5 cut(s) 51, 189, 353, 519, 647
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 443, 524
TspRI CASTG 1 cut(s) 154
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 501, 537
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.