Rh7BG456000

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000887
Physical Location & Seq
Forward (+)
53812072 .. 53813504
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG456000.1

Sequence Viewer

Length: 561 bp
ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCACTGTCAGGTCAATGAAGCATCCAACTACACCCAAAGTTCCATATCCCCCAACATAAGAAGATCAAGTGCTGCTTGTCATGGAATTGTGATGAGCTCCTACTCTTGTCAAAGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

186

Amino Acids

20.82

Weight (kDa)

5.02

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 78 - 175 8.3e-15 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 32, 147, 329
AfaI GTAC 2 cut(s) 9, 321
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 2 cut(s) 57, 419
AluBI AGCT 4 cut(s) 95, 161, 534, 557
AluI AGCT 4 cut(s) 95, 161, 534, 557
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 201, 279
ApeKI GCWGC 4 cut(s) 77, 158, 423, 509
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 4 cut(s) 64, 170, 410, 496
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 201, 279
BfaI CTAG 2 cut(s) 135, 171
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 4 cut(s) 78, 159, 424, 510
BlsI GCNGC 4 cut(s) 79, 160, 425, 511
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 315
BmsI GCATC 5 cut(s) 88, 110, 290, 313, 467
BoxI GACNNNNGTC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 10, 458
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 4 cut(s) 64, 170, 410, 496
BseYI CCCAGC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 201, 279
BsmBI CGTCTC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 1 cut(s) 500
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 213, 315
BspTNI GGTCTC 1 cut(s) 201
BssMI GATC 1 cut(s) 500
Bst4CI ACNGT 4 cut(s) 186, 332, 359, 443
BstAPI GCANNNNNTGC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 82, 276
BstF5I GGATG 2 cut(s) 10, 458
BstKTI GATC 1 cut(s) 503
BstMAI GTCTC 2 cut(s) 201, 279
BstMBI GATC 1 cut(s) 500
BstMWI GCNNNNNNNGC 2 cut(s) 278, 432
BstNSI RCATGY 1 cut(s) 430
BstPAI GACNNNNGTC 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 64, 170, 410, 496
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 10, 458
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 8, 320
CviAII CATG 3 cut(s) 241, 427, 518
CviJI RGCY 4 cut(s) 95, 161, 534, 557
CviKI_1 RGCY 4 cut(s) 95, 161, 534, 557
CviQI GTAC 2 cut(s) 8, 320
DdeI CTNAG 2 cut(s) 82, 276
DpnI GATC 1 cut(s) 502
DpnII GATC 1 cut(s) 500
Ecl136II GAGCTC 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 536
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 534
Eco57I CTGAAG 3 cut(s) 32, 147, 329
EcoICRI GAGCTC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 3 cut(s) 244, 430, 521
FalI AAGNNNNNCTT 3 cut(s) 496, 528, 541
FatI CATG 3 cut(s) 240, 426, 517
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 78, 159, 424, 510
FokI GGATG 2 cut(s) 17, 445
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 4 cut(s) 78, 159, 424, 510
FspBI CTAG 2 cut(s) 135, 171
GluI GCNGC 4 cut(s) 78, 159, 424, 510
GsaI CCCAGC 1 cut(s) 228
HgaI GACGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 244, 430, 521
HincII GTYRAC 2 cut(s) 140, 355
HindII GTYRAC 2 cut(s) 140, 355
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 4 cut(s) 29, 140, 355, 365
Hpy188I TCNGA 7 cut(s) 118, 166, 250, 309, 338, 376, 398
Hpy8I GTNNAC 4 cut(s) 29, 140, 355, 365
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 4 cut(s) 186, 332, 359, 443
HpyCH4V TGCA 3 cut(s) 101, 158, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 432
HpyF3I CTNAG 2 cut(s) 82, 276
Hsp92II CATG 3 cut(s) 244, 430, 521
Kzo9I GATC 1 cut(s) 500
LmnI GCTCC 2 cut(s) 92, 539
LpnPI CCDG 8 cut(s) 57, 189, 210, 219, 228, 263, 330, 431
Lsp1109I GCAGC 4 cut(s) 64, 170, 410, 496
LweI GCATC 5 cut(s) 88, 110, 290, 313, 467
MaeI CTAG 2 cut(s) 135, 171
MalI GATC 1 cut(s) 502
MboI GATC 1 cut(s) 500
MboII GAAGA 3 cut(s) 25, 389, 510
MhlI GDGCHC 1 cut(s) 536
MluCI AATT 3 cut(s) 324, 406, 522
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 273, 486
MnlI CCTC 1 cut(s) 82
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 2 cut(s) 153, 327
MslI CAYNNNNRTG 2 cut(s) 106, 418
MwoI GCNNNNNNNGC 2 cut(s) 278, 432
NdeII GATC 1 cut(s) 500
NlaIII CATG 3 cut(s) 244, 430, 521
NlaIV GGNNCC 2 cut(s) 213, 315
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PkrI GCNGC 4 cut(s) 79, 160, 425, 511
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 213, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 9, 321
RsaNI GTAC 2 cut(s) 8, 320
RseI CAYNNNNRTG 2 cut(s) 106, 418
SacI GAGCTC 1 cut(s) 536
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 327
SatI GCNGC 4 cut(s) 78, 159, 424, 510
Sau3AI GATC 1 cut(s) 500
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 536
SfaNI GCATC 5 cut(s) 88, 110, 290, 313, 467
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 106, 418
SphI GCATGC 1 cut(s) 430
Sse9I AATT 3 cut(s) 324, 406, 522
SspMI CTAG 2 cut(s) 135, 171
SstI GAGCTC 1 cut(s) 536
TaaI ACNGT 4 cut(s) 186, 332, 359, 443
TaqI TCGA 1 cut(s) 139
TasI AATT 3 cut(s) 324, 406, 522
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 2 cut(s) 153, 327
Tru9I TTAA 2 cut(s) 153, 327
TscAI CASTG 1 cut(s) 446
TseI GCWGC 4 cut(s) 77, 158, 423, 509
TspDTI ATGAA 1 cut(s) 468
TspRI CASTG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 313
XceI RCATGY 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 2 cut(s) 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.