Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG168100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCAGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTTAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCGCTGTAAGATACCTACGGTGAATCAAGAGACTGGCATTCAAGGAACTGAGCCAAATGAAACTCTCAAGAAATTTCGATCGGATGCAACTGTGTATCCATCTCGGAAACAGCGGGGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

228

Amino Acids

25.61

Weight (kDa)

5.51

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC	PF03473	78 - 212	3.7e-22	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	139, 561
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	2 cut(s)	439, 550
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	3 cut(s)	32, 147, 329
AfaI	GTAC	2 cut(s)	9, 321
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	3 cut(s)	57, 419, 479
AluBI	AGCT	2 cut(s)	95, 161
AluI	AGCT	2 cut(s)	95, 161
Alw26I	GTCTC	3 cut(s)	201, 279, 461
Aor13HI	TCCGGA	1 cut(s)	679
ApeKI	GCWGC	3 cut(s)	77, 158, 423
ApoI	RAATTY	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	64, 170, 410
BccI	CCATC	2 cut(s)	41, 544
BciVI	GTATCC	2 cut(s)	283, 543
BcoDI	GTCTC	3 cut(s)	201, 279, 461
BfaI	CTAG	3 cut(s)	135, 171, 578
BfuI	GTATCC	2 cut(s)	283, 543
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	3 cut(s)	78, 159, 424
BlsI	GCNGC	3 cut(s)	79, 160, 425
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	213, 315
BmsI	GCATC	5 cut(s)	88, 110, 290, 313, 511
BoxI	GACNNNNGTC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	475
BseAI	TCCGGA	1 cut(s)	679
BseGI	GGATG	2 cut(s)	10, 526
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	290, 477
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	64, 170, 410
BseYI	CCCAGC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	518
BsiEI	CGRYCG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	3 cut(s)	201, 279, 461
BsmBI	CGTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	2 cut(s)	515, 634
BspACI	CCGC	2 cut(s)	439, 550
BspCNI	CTCAG	2 cut(s)	289, 478
BspEI	TCCGGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	213, 315
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	515, 634
Bst4CI	ACNGT	5 cut(s)	186, 332, 359, 457, 529
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	428, 604
BstDEI	CTNAG	3 cut(s)	82, 276, 486
BstF5I	GGATG	2 cut(s)	10, 526
BstKTI	GATC	2 cut(s)	518, 637
BstMAI	GTCTC	3 cut(s)	201, 279, 461
BstMBI	GATC	2 cut(s)	515, 634
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 432
BstNSI	RCATGY	1 cut(s)	430
BstPAI	GACNNNNGTC	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	64, 170, 410
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuI	GTATCC	2 cut(s)	283, 543
BtsCI	GGATG	2 cut(s)	10, 526
Cac8I	GCNNGC	2 cut(s)	428, 604
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	8, 320
CviAII	CATG	4 cut(s)	241, 427, 644, 655
CviJI	RGCY	3 cut(s)	95, 161, 490
CviKI_1	RGCY	3 cut(s)	95, 161, 490
CviQI	GTAC	2 cut(s)	8, 320
DdeI	CTNAG	3 cut(s)	82, 276, 486
DpnI	GATC	2 cut(s)	517, 636
DpnII	GATC	2 cut(s)	515, 634
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	3 cut(s)	32, 147, 329
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	4 cut(s)	244, 430, 647, 658
FatI	CATG	4 cut(s)	240, 426, 643, 654
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	139, 561
Fnu4HI	GCNGC	3 cut(s)	78, 159, 424
FokI	GGATG	2 cut(s)	17, 533
Fsp4HI	GCNGC	3 cut(s)	78, 159, 424
FspBI	CTAG	3 cut(s)	135, 171, 578
GluI	GCNGC	3 cut(s)	78, 159, 424
GsaI	CCCAGC	1 cut(s)	228
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	244, 430, 647, 658
HincII	GTYRAC	2 cut(s)	140, 355
HindII	GTYRAC	2 cut(s)	140, 355
HinfI	GANTC	3 cut(s)	25, 460, 590
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	5 cut(s)	29, 140, 355, 365, 562
Hpy188III	TCNNGA	3 cut(s)	464, 505, 680
Hpy8I	GTNNAC	5 cut(s)	29, 140, 355, 365, 562
HpyAV	CCTTC	3 cut(s)	304, 549, 604
HpyCH4III	ACNGT	5 cut(s)	186, 332, 359, 457, 529
HpyCH4V	TGCA	5 cut(s)	101, 158, 426, 524, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 432
HpyF3I	CTNAG	3 cut(s)	82, 276, 486
Hsp92II	CATG	4 cut(s)	244, 430, 647, 658
Kpn2I	TCCGGA	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	515, 634
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	9 cut(s)	57, 189, 210, 219, 228, 263, 330, 456, 588
Lsp1109I	GCAGC	3 cut(s)	64, 170, 410
LweI	GCATC	5 cut(s)	88, 110, 290, 313, 511
MaeI	CTAG	3 cut(s)	135, 171, 578
MalI	GATC	2 cut(s)	517, 636
MboI	GATC	2 cut(s)	515, 634
MboII	GAAGA	4 cut(s)	25, 389, 629, 632
MflI	RGATCY	1 cut(s)	634
MluCI	AATT	3 cut(s)	324, 406, 509
MlyI	GAGTC	2 cut(s)	34, 584
MmeI	TCCRAC	2 cut(s)	273, 610
MnlI	CCTC	3 cut(s)	82, 659, 673
Mph1103I	ATGCAT	1 cut(s)	103
MroI	TCCGGA	1 cut(s)	679
MseI	TTAA	3 cut(s)	153, 180, 327
MslI	CAYNNNNRTG	2 cut(s)	106, 418
MspA1I	CMGCKG	2 cut(s)	441, 550
MspI	CCGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	278, 432
NdeII	GATC	2 cut(s)	515, 634
NlaIII	CATG	4 cut(s)	244, 430, 647, 658
NlaIV	GGNNCC	2 cut(s)	213, 315
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	79, 160, 425
Ple19I	CGATCG	1 cut(s)	518
PleI	GAGTC	2 cut(s)	33, 584
PpsI	GAGTC	2 cut(s)	33, 584
PpuMI	RGGWCCY	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	213, 315
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	634
PvuI	CGATCG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	9, 321
RsaNI	GTAC	2 cut(s)	8, 320
RseI	CAYNNNNRTG	2 cut(s)	106, 418
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	153, 180, 327
SatI	GCNGC	3 cut(s)	78, 159, 424
Sau3AI	GATC	2 cut(s)	515, 634
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	34, 584
SetI	ASST	9 cut(s)	97, 136, 163, 178, 208, 217, 255, 454, 630
SfaNI	GCATC	5 cut(s)	88, 110, 290, 313, 511
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	106, 418
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	3 cut(s)	324, 406, 509
SsiI	CCGC	2 cut(s)	439, 550
SspMI	CTAG	3 cut(s)	135, 171, 578
TaaI	ACNGT	5 cut(s)	186, 332, 359, 457, 529
TaqI	TCGA	2 cut(s)	139, 514
TasI	AATT	3 cut(s)	324, 406, 509
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	153, 180, 327
Tru9I	TTAA	3 cut(s)	153, 180, 327
TseI	GCWGC	3 cut(s)	77, 158, 423
TspDTI	ATGAA	3 cut(s)	510, 632, 687
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	2 cut(s)	139, 561
XspI	CTAG	3 cut(s)	135, 171, 578
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.