Rmu_sc0000528.1_g000016

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000528.1
Physical Location & Seq
Reverse (-)
75429 .. 81176
5748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000528.1_g000016.1.cds

Sequence Viewer

Length: 816 bp
atggttgtggcaacgtgggcgtcatctcgggaggtcagtttggcgtactgggatgcaaaagatcttggtttgattccggattcagattgggctgcttcaaggtctcatcactgcttcaaggcgtcggagaaccccatgagggaaatcaagctccagaagctcgtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaaggtctttggagcaactcagtggccagacccctattttctccaaagctcggtgttcaaagacaggaatctggttacatggcttgtcagaagggctgagagggctagttacaaggaaatagtcctcactgctgacactccaaggctcgggtgcagggacgctgatatcaagaacaggtttactatgccaccaagtttgacattgaaaaacttcgaaaatttggatcttggaaagattgatgagaccaatgattctggattatcatcatatgttgctggactatttgccggctctctcagctggaagtggctatggttttctctaggtgatggcgatgaagtggccatggtgtacctagaaacggggcgggggtgcacacttgcagctagcgatggtggtggatcgcatgcgggcgcatcgatgtcactcttccaggcgtgggaggacgagactttggtcttgagcgaggtggtggtgatttggttggagatgactgcgtcggggcttgtagatgaggtgatttttttcaaagttggtaggcattttctagttgcggaggaggcgtgcgactctgtttttgactcggcaacgcttgtgttgtag

Protein Analysis

271

Amino Acids

29.93

Weight (kDa)

4.87

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 5 cut(s) 189, 210, 580, 623, 767
AclWI GGATC 2 cut(s) 444, 622
AcoI YGGCCR 2 cut(s) 236, 555
AcsI RAATTY 1 cut(s) 430
AcyI GRCGYC 2 cut(s) 20, 122
AfaI GTAC 2 cut(s) 47, 566
AfiI CCNNNNNNNGG 5 cut(s) 139, 262, 359, 574, 652
AgsI TTSAA 5 cut(s) 99, 118, 271, 418, 742
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 5 cut(s) 151, 160, 261, 513, 599
AluI AGCT 5 cut(s) 151, 160, 261, 513, 599
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 4 cut(s) 108, 203, 449, 656
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 444, 622
Ama87I CYCGRG 2 cut(s) 27, 359
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 3 cut(s) 207, 236, 555
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 92, 596
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 773, 805
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 629
AsuHPI GGTGA 4 cut(s) 193, 551, 700, 742
AsuII TTCGAA 1 cut(s) 426
AsuNHI GCTAGC 1 cut(s) 599
AvaI CYCGRG 2 cut(s) 27, 359
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 2 cut(s) 238, 557
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 79, 608
BccI CCATC 2 cut(s) 536, 599
BciT130I CCWGG 1 cut(s) 647
BcoDI GTCTC 4 cut(s) 108, 203, 449, 656
BfaI CTAG 5 cut(s) 318, 536, 569, 600, 761
BglII AGATCT 1 cut(s) 61
BisI GCNGC 4 cut(s) 93, 190, 210, 597
BlsI GCNGC 4 cut(s) 94, 191, 211, 598
Bme1390I CCNGG 1 cut(s) 647
BmeT110I CYCGRG 2 cut(s) 27, 359
BmrFI CCNGG 1 cut(s) 647
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 43, 638
BmtI GCTAGC 1 cut(s) 603
BmuI ACTGGG 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 475
BsaHI GRCGYC 2 cut(s) 20, 122
BsaI GGTCTC 2 cut(s) 108, 449
BsaJI CCNNGG 4 cut(s) 204, 213, 353, 558
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 262, 359, 574, 652
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 475
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 647
BseCI ATCGAT 1 cut(s) 632
BseDI CCNNGG 4 cut(s) 204, 213, 353, 558
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 475
BseLI CCNNNNNNNGG 5 cut(s) 139, 262, 359, 574, 652
BseMII CTCAG 3 cut(s) 245, 300, 523
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 2 cut(s) 79, 608
BsgI GTGCAG 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 3 cut(s) 209, 238, 557
BshVI ATCGAT 1 cut(s) 632
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 2 cut(s) 27, 359
BsiSI CCGG 2 cut(s) 77, 501
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 5 cut(s) 139, 262, 359, 574, 652
BsmAI GTCTC 4 cut(s) 108, 203, 449, 656
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 3 cut(s) 209, 238, 557
Bso31I GGTCTC 2 cut(s) 108, 449
BsoBI CYCGRG 2 cut(s) 27, 359
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 590
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 4 cut(s) 61, 193, 436, 614
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 5 cut(s) 189, 210, 580, 623, 767
BspANI GGCC 3 cut(s) 209, 238, 557
BspCNI CTCAG 3 cut(s) 244, 301, 522
BspDI ATCGAT 1 cut(s) 632
BspEI TCCGGA 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 2 cut(s) 444, 622
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 2 cut(s) 108, 449
BsrBI CCGCTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 4 cut(s) 204, 213, 353, 558
BssMI GATC 4 cut(s) 61, 193, 436, 614
BssNI GRCGYC 2 cut(s) 20, 122
BssT1I CCWWGG 4 cut(s) 204, 213, 353, 558
Bst2UI CCWGG 1 cut(s) 647
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 2 cut(s) 20, 122
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 502, 601, 621, 625, 778
BstDEI CTNAG 3 cut(s) 231, 309, 509
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 4 cut(s) 64, 196, 439, 617
BstMAI GTCTC 4 cut(s) 108, 203, 449, 656
BstMBI GATC 4 cut(s) 61, 193, 436, 614
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 6 cut(s) 17, 157, 189, 314, 510, 773
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 1 cut(s) 623
BstPAI GACNNNNGTC 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 79, 608
BstX2I RGATCY 2 cut(s) 61, 436
BstYI RGATCY 2 cut(s) 61, 436
Bsu15I ATCGAT 1 cut(s) 632
BsuRI GGCC 3 cut(s) 209, 238, 557
BsuTUI ATCGAT 1 cut(s) 632
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 2 cut(s) 561, 618
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 2 cut(s) 109, 339
BtsIMutI CAGTG 3 cut(s) 109, 239, 339
Cac8I GCNNGC 5 cut(s) 502, 601, 621, 625, 778
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 632
CseI GACGC 4 cut(s) 9, 111, 380, 699
Csp6I GTAC 2 cut(s) 46, 565
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 4 cut(s) 136, 291, 559, 620
CviQI GTAC 2 cut(s) 46, 565
DdeI CTNAG 3 cut(s) 231, 309, 509
DpnI GATC 4 cut(s) 63, 195, 438, 616
DpnII GATC 4 cut(s) 61, 193, 436, 614
EaeI YGGCCR 2 cut(s) 236, 555
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco130I CCWWGG 4 cut(s) 204, 213, 353, 558
Eco31I GGTCTC 2 cut(s) 108, 449
Eco32I GATATC 1 cut(s) 379
Eco88I CYCGRG 2 cut(s) 27, 359
EcoRII CCWGG 1 cut(s) 645
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 4 cut(s) 204, 213, 353, 558
ErhI CCWWGG 4 cut(s) 204, 213, 353, 558
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 4 cut(s) 139, 294, 562, 623
FaiI YATR 8 cut(s) 137, 292, 398, 481, 483, 526, 560, 621
FaqI GGGAC 1 cut(s) 383
FatI CATG 4 cut(s) 135, 290, 558, 619
FauI CCCGC 2 cut(s) 573, 616
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 93, 190, 210, 597
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 93, 190, 210, 597
FspBI CTAG 5 cut(s) 318, 536, 569, 600, 761
GlaI GCGC 1 cut(s) 628
GluI GCNGC 4 cut(s) 93, 190, 210, 597
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 3 cut(s) 209, 238, 557
HapII CCGG 2 cut(s) 77, 501
HgaI GACGC 4 cut(s) 9, 111, 380, 699
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 2 cut(s) 20, 122
Hin1II CATG 4 cut(s) 139, 294, 562, 623
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 6 cut(s) 73, 80, 280, 464, 782, 794
HpaII CCGG 2 cut(s) 77, 501
HphI GGTGA 4 cut(s) 193, 551, 700, 742
Hpy166II GTNNAC 3 cut(s) 393, 565, 588
Hpy188I TCNGA 3 cut(s) 85, 127, 302
Hpy188III TCNNGA 6 cut(s) 29, 77, 154, 382, 468, 673
Hpy8I GTNNAC 3 cut(s) 393, 565, 588
Hpy99I CGWCG 3 cut(s) 127, 182, 715
HpyAV CCTTC 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 4 cut(s) 56, 366, 588, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 157, 189, 314, 510, 773
HpyF3I CTNAG 3 cut(s) 231, 309, 509
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 20, 122
Hsp92II CATG 4 cut(s) 139, 294, 562, 623
HspAI GCGC 1 cut(s) 627
Kpn2I TCCGGA 1 cut(s) 76
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 61, 193, 436, 614
LmnI GCTCC 2 cut(s) 156, 224
Lsp1109I GCAGC 2 cut(s) 79, 608
LweI GCATC 2 cut(s) 43, 638
MaeI CTAG 5 cut(s) 318, 536, 569, 600, 761
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 286, 320, 636
MalI GATC 4 cut(s) 63, 195, 438, 616
MbiI CCGCTC 1 cut(s) 189
MboI GATC 4 cut(s) 61, 193, 436, 614
MboII GAAGA 1 cut(s) 634
MflI RGATCY 2 cut(s) 61, 436
MhlI GDGCHC 1 cut(s) 590
MlsI TGGCCA 2 cut(s) 238, 557
MluCI AATT 1 cut(s) 430
MluNI TGGCCA 2 cut(s) 238, 557
MlyI GAGTC 2 cut(s) 776, 788
MmeI TCCRAC 2 cut(s) 105, 678
Mox20I TGGCCA 2 cut(s) 238, 557
MroI TCCGGA 1 cut(s) 76
MroNI GCCGGC 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 422
MscI TGGCCA 2 cut(s) 238, 557
Msp20I TGGCCA 2 cut(s) 238, 557
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 2 cut(s) 77, 501
MspR9I CCNGG 1 cut(s) 647
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 6 cut(s) 17, 157, 189, 314, 510, 773
NaeI GCCGGC 1 cut(s) 502
NcoI CCATGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 481
NdeII GATC 4 cut(s) 61, 193, 436, 614
NgoMIV GCCGGC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 4 cut(s) 139, 294, 562, 623
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 1 cut(s) 636
NspI RCATGY 1 cut(s) 623
NspV TTCGAA 1 cut(s) 426
PaeI GCATGC 1 cut(s) 623
PdiI GCCGGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 4 cut(s) 73, 80, 280, 464
PflFI GACNNNGTC 1 cut(s) 709
PkrI GCNGC 4 cut(s) 94, 191, 211, 598
Ple19I CGATCG 1 cut(s) 196
PleI GAGTC 2 cut(s) 776, 788
PpsI GAGTC 2 cut(s) 776, 788
PshAI GACNNNNGTC 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PsuI RGATCY 2 cut(s) 61, 436
PsyI GACNNNGTC 1 cut(s) 709
PvuI CGATCG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 513
RsaI GTAC 2 cut(s) 47, 566
RsaNI GTAC 2 cut(s) 46, 565
SatI GCNGC 4 cut(s) 93, 190, 210, 597
Sau3AI GATC 4 cut(s) 61, 193, 436, 614
SchI GAGTC 2 cut(s) 776, 788
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 2 cut(s) 43, 638
SfuI TTCGAA 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SphI GCATGC 1 cut(s) 623
Sse9I AATT 1 cut(s) 430
SsiI CCGC 5 cut(s) 189, 210, 580, 623, 767
SspMI CTAG 5 cut(s) 318, 536, 569, 600, 761
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 4 cut(s) 204, 213, 353, 558
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 426, 632
TasI AATT 1 cut(s) 430
TauI GCSGC 2 cut(s) 192, 212
TfiI GAWTC 4 cut(s) 73, 80, 280, 464
TscAI CASTG 3 cut(s) 116, 239, 346
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 2 cut(s) 92, 596
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 1 cut(s) 564
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 116, 239, 346
Tth111I GACNNNGTC 1 cut(s) 709
VneI GTGCAC 1 cut(s) 586
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 5 cut(s) 318, 536, 569, 600, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.