Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

66994374 .. 66996979

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGACGATCGTCTCACCAAGGCCGCCAAGGTCTTTGGTGCAACTCAGTGGCCAGACCCCTGTTTTCTCCAAAGACACTGTCCACTGGCTAATTCCAGCATTGGAGGAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTACTGACACTCCAAGGCTCGGGCGCAGGGACGCTGATATCAAGAATAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTCGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGAGGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGGTACCGTTTCATGTGGTACTTTCAAAAGAGCCAGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

214

Amino Acids

23.61

Weight (kDa)

9.67

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	46 - 152	4e-20	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	590
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	580
AciI	CCGC	2 cut(s)	75, 439
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	2 cut(s)	604, 619
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	208, 355, 498, 625
AjnI	CCWGG	2 cut(s)	175, 632
AluBI	AGCT	3 cut(s)	25, 450, 536
AluI	AGCT	3 cut(s)	25, 450, 536
Alw26I	GTCTC	2 cut(s)	68, 386
AlwI	GGATC	1 cut(s)	381
AlwNI	CAGNNNCTG	2 cut(s)	176, 639
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	72, 101
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	4 cut(s)	115, 147, 165, 197
Asp700I	GAANNNNTTC	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	16, 173
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	16, 173
BalI	TGGCCA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	602
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	177, 634
BcoDI	GTCTC	2 cut(s)	68, 386
BfaI	CTAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	75, 519
BlsI	GCNGC	2 cut(s)	76, 520
Bme1390I	CCNGG	2 cut(s)	177, 634
Bme18I	GGWCC	2 cut(s)	16, 173
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	16, 173
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	2 cut(s)	177, 634
BmsI	GCATC	2 cut(s)	422, 551
BoxI	GACNNNNGTC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	69, 78, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	177, 634
BseDI	CCNNGG	3 cut(s)	69, 78, 290
BseJI	GATNNNNATC	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	4 cut(s)	110, 237, 460, 528
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	505
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 103
BshNI	GGYRCC	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	68, 386
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	74, 103
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	58, 373
BspACI	CCGC	2 cut(s)	75, 439
BspANI	GGCC	2 cut(s)	74, 103
BspCNI	CTCAG	4 cut(s)	109, 238, 459, 529
BspLI	GGNNCC	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	69, 78, 290
BssMI	GATC	2 cut(s)	58, 373
BssT1I	CCWWGG	3 cut(s)	69, 78, 290
Bst2UI	CCWGG	2 cut(s)	177, 634
Bst4CI	ACNGT	2 cut(s)	131, 607
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	5 cut(s)	96, 246, 446, 523, 537
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	61, 376
BstMAI	GTCTC	2 cut(s)	68, 386
BstMBI	GATC	2 cut(s)	58, 373
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 447
BstNI	CCWGG	2 cut(s)	177, 634
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	175, 632
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	74, 103
BtsIMutI	CAGTG	4 cut(s)	104, 127, 134, 637
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	2 cut(s)	176, 639
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	16, 173
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	603, 618
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	1 cut(s)	612
CviQI	GTAC	2 cut(s)	603, 618
DdeI	CTNAG	5 cut(s)	96, 246, 446, 523, 537
DpnI	GATC	2 cut(s)	60, 375
DpnII	GATC	2 cut(s)	58, 373
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	3 cut(s)	69, 78, 290
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	16, 173
Eco88I	CYCGRG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	175, 632
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	69, 78, 290
ErhI	CCWWGG	3 cut(s)	69, 78, 290
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	615
FaiI	YATR	7 cut(s)	201, 335, 418, 420, 464, 502, 613
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	611
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	75, 519
Fsp4HI	GCNGC	2 cut(s)	75, 519
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	2 cut(s)	75, 519
HaeIII	GGCC	2 cut(s)	74, 103
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	615
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	3 cut(s)	217, 401, 466
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	4 cut(s)	134, 330, 470, 581
Hpy188I	TCNGA	2 cut(s)	239, 559
Hpy188III	TCNNGA	3 cut(s)	19, 319, 405
Hpy8I	GTNNAC	4 cut(s)	134, 330, 470, 581
Hpy99I	CGWCG	2 cut(s)	47, 59
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	131, 607
HpyCH4V	TGCA	2 cut(s)	92, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 447
HpyF3I	CTNAG	5 cut(s)	96, 246, 446, 523, 537
Hsp92II	CATG	1 cut(s)	615
HspAI	GCGC	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	58, 373
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	422, 551
MabI	ACCWGGT	1 cut(s)	175
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	223, 257
MalI	GATC	2 cut(s)	60, 375
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	2 cut(s)	58, 373
MboII	GAAGA	1 cut(s)	466
MflI	RGATCY	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	2 cut(s)	142, 367
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	41, 149, 175, 243, 284, 523, 532
Mox20I	TGGCCA	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	547
Msp20I	TGGCCA	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	177, 634
MvaI	CCWGG	2 cut(s)	177, 634
MwoI	GCNNNNNNNGC	2 cut(s)	251, 447
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	58, 373
NlaIII	CATG	1 cut(s)	615
NlaIV	GGNNCC	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	217, 401
PflFI	GACNNNGTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	76, 520
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	173
PshAI	GACNNNNGTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	175, 632
PspGI	CCWGG	2 cut(s)	175, 632
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	2 cut(s)	16, 173
PspPPI	RGGWCCY	1 cut(s)	173
PstNI	CAGNNNCTG	2 cut(s)	176, 639
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	129
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	450
RsaI	GTAC	2 cut(s)	604, 619
RsaNI	GTAC	2 cut(s)	603, 618
RseI	CAYNNNNRTG	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	2 cut(s)	75, 519
Sau3AI	GATC	2 cut(s)	58, 373
Sau96I	GGNCC	2 cut(s)	16, 173
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	177, 634
SetI	ASST	9 cut(s)	18, 27, 84, 178, 329, 452, 538, 577, 604
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	422, 551
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	2 cut(s)	16, 173
SmiMI	CAYNNNNRTG	1 cut(s)	547
Sse9I	AATT	2 cut(s)	142, 367
SsiI	CCGC	2 cut(s)	75, 439
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	175, 632
StyI	CCWWGG	3 cut(s)	69, 78, 290
TaaI	ACNGT	2 cut(s)	131, 607
TaqI	TCGA	2 cut(s)	363, 580
TasI	AATT	2 cut(s)	142, 367
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	217, 401
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	104, 134, 141
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	1 cut(s)	600
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	104, 134, 141
Tth111I	GACNNNGTC	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	16, 173
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.