Rh5DG154900

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000887
Physical Location & Seq
Reverse (-)
15789620 .. 15791424
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG154900.1

Sequence Viewer

Length: 687 bp
ATGGATGAACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGACGAGGGAGCTGATGCATCAAAATGGTTTTCTGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCTTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCTGACATTTTTCCATACTTAATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTAAAGGACCCTGTACCGATTAACCGTTTCAGACCCAACATTCTTGTTGATGGTTGTGAACCATTTTCAGAAGACTTATGGACAGATGTCAGGATAAACAGGTTCACATTTCAATGCTGCATGCTGTGCTACCGCTGCAAGATACCTACGGTGAATCAAGAGACTGGCATTCAAGGAACTGAGCCAAATGAAACTCTCAAGAAATTTCGATCGGATGCAACTGTGTATCCATCTCGGAAACAGCAGGGAAGGGTCTACTTCGGGCAGTATCTTGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

228

Amino Acids

25.67

Weight (kDa)

5.35

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 79 - 212 2e-22 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 139, 561
AccIII TCCGGA 1 cut(s) 679
AciI CCGC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 2 cut(s) 32, 147
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 655
AgsI TTSAA 3 cut(s) 57, 419, 479
AluBI AGCT 2 cut(s) 95, 161
AluI AGCT 2 cut(s) 95, 161
Alw26I GTCTC 3 cut(s) 201, 279, 461
Aor13HI TCCGGA 1 cut(s) 679
ApeKI GCWGC 4 cut(s) 77, 158, 423, 441
ApoI RAATTY 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 4 cut(s) 64, 170, 410, 428
BccI CCATC 3 cut(s) 41, 350, 544
BciVI GTATCC 2 cut(s) 283, 543
BcoDI GTCTC 3 cut(s) 201, 279, 461
BfaI CTAG 2 cut(s) 135, 171
BfuI GTATCC 2 cut(s) 283, 543
BglII AGATCT 1 cut(s) 634
BisI GCNGC 4 cut(s) 78, 159, 424, 442
BlsI GCNGC 4 cut(s) 79, 160, 425, 443
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 315
BmsI GCATC 5 cut(s) 88, 110, 290, 313, 511
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 679
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 475
BseAI TCCGGA 1 cut(s) 679
BseGI GGATG 2 cut(s) 10, 526
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMII CTCAG 2 cut(s) 290, 477
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 4 cut(s) 64, 170, 410, 428
BseYI CCCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 680
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 3 cut(s) 201, 279, 461
BsmBI CGTCTC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 679
Bsp143I GATC 2 cut(s) 515, 634
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 2 cut(s) 289, 478
BspEI TCCGGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 213, 315
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 475
BssMI GATC 2 cut(s) 515, 634
Bst4CI ACNGT 3 cut(s) 332, 457, 529
BstAPI GCANNNNNTGC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 428, 604
BstDEI CTNAG 3 cut(s) 82, 276, 486
BstF5I GGATG 2 cut(s) 10, 526
BstKTI GATC 2 cut(s) 518, 637
BstMAI GTCTC 3 cut(s) 201, 279, 461
BstMBI GATC 2 cut(s) 515, 634
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 3 cut(s) 278, 432, 441
BstNSI RCATGY 1 cut(s) 430
BstPAI GACNNNNGTC 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 64, 170, 410, 428
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuI GTATCC 2 cut(s) 283, 543
BtsCI GGATG 2 cut(s) 10, 526
Cac8I GCNNGC 2 cut(s) 428, 604
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 320
CviAII CATG 4 cut(s) 241, 427, 644, 655
CviJI RGCY 3 cut(s) 95, 161, 490
CviKI_1 RGCY 3 cut(s) 95, 161, 490
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 3 cut(s) 82, 276, 486
DpnI GATC 2 cut(s) 517, 636
DpnII GATC 2 cut(s) 515, 634
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 32, 147
EcoO109I RGGNCCY 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 4 cut(s) 244, 430, 647, 658
FatI CATG 4 cut(s) 240, 426, 643, 654
FblI GTMKAC 2 cut(s) 139, 561
Fnu4HI GCNGC 4 cut(s) 78, 159, 424, 442
FokI GGATG 2 cut(s) 17, 533
Fsp4HI GCNGC 4 cut(s) 78, 159, 424, 442
FspBI CTAG 2 cut(s) 135, 171
GluI GCNGC 4 cut(s) 78, 159, 424, 442
GsaI CCCAGC 1 cut(s) 228
HapII CCGG 1 cut(s) 680
HgaI GACGC 1 cut(s) 261
Hin1II CATG 4 cut(s) 244, 430, 647, 658
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 3 cut(s) 25, 460, 590
HpaII CCGG 1 cut(s) 680
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 5 cut(s) 29, 140, 365, 411, 562
Hpy188I TCNGA 8 cut(s) 118, 166, 250, 338, 376, 520, 543, 597
Hpy188III TCNNGA 4 cut(s) 397, 464, 505, 680
Hpy8I GTNNAC 5 cut(s) 29, 140, 365, 411, 562
HpyAV CCTTC 3 cut(s) 195, 549, 604
HpyCH4III ACNGT 3 cut(s) 332, 457, 529
HpyCH4V TGCA 6 cut(s) 101, 158, 426, 444, 524, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 432, 441
HpyF3I CTNAG 3 cut(s) 82, 276, 486
Hsp92II CATG 4 cut(s) 244, 430, 647, 658
Kpn2I TCCGGA 1 cut(s) 679
Kzo9I GATC 2 cut(s) 515, 634
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 4 cut(s) 64, 170, 410, 428
LweI GCATC 5 cut(s) 88, 110, 290, 313, 511
MaeI CTAG 2 cut(s) 135, 171
MalI GATC 2 cut(s) 517, 636
MboI GATC 2 cut(s) 515, 634
MboII GAAGA 4 cut(s) 25, 389, 629, 632
MflI RGATCY 1 cut(s) 634
MluCI AATT 1 cut(s) 509
MlyI GAGTC 2 cut(s) 34, 584
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 3 cut(s) 82, 659, 673
Mph1103I ATGCAT 1 cut(s) 103
MroI TCCGGA 1 cut(s) 679
MseI TTAA 3 cut(s) 153, 266, 327
MslI CAYNNNNRTG 2 cut(s) 106, 418
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 680
Mva1269I GAATGC 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 278, 432, 441
NdeII GATC 2 cut(s) 515, 634
NlaIII CATG 4 cut(s) 244, 430, 647, 658
NlaIV GGNNCC 2 cut(s) 213, 315
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 4 cut(s) 79, 160, 425, 443
Ple19I CGATCG 1 cut(s) 518
PleI GAGTC 2 cut(s) 33, 584
PpsI GAGTC 2 cut(s) 33, 584
PpuMI RGGWCCY 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 213, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
PsuI RGATCY 1 cut(s) 634
PvuI CGATCG 1 cut(s) 518
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 2 cut(s) 106, 418
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 153, 266, 327
SatI GCNGC 4 cut(s) 78, 159, 424, 442
Sau3AI GATC 2 cut(s) 515, 634
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 34, 584
SfaNI GCATC 5 cut(s) 88, 110, 290, 313, 511
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 106, 418
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 430
Sse9I AATT 1 cut(s) 509
SsiI CCGC 1 cut(s) 439
SspMI CTAG 2 cut(s) 135, 171
TaaI ACNGT 3 cut(s) 332, 457, 529
TaqI TCGA 2 cut(s) 139, 514
TasI AATT 1 cut(s) 509
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 153, 266, 327
Tru9I TTAA 3 cut(s) 153, 266, 327
TseI GCWGC 4 cut(s) 77, 158, 423, 441
TspDTI ATGAA 4 cut(s) 21, 510, 632, 687
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 139, 561
XspI CTAG 2 cut(s) 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.