Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

310763 .. 313221

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgcctcttgtagcttggcgtcattgttgtaaacccaaggaggaaggaggtttgggactacgtgatctctttgaggcgtcggagaaccccatgagggaaatcaaagtccagaagctcgtcctcaacatctccgttggcaagagcggccgcggcgatcgtctcaccaaggccgccaagcttgtcagaaggactgagagggctggttacaaggcaatagtcctcactgctgacactccaaggctcgggcacagggacgctgatatcaagacaggtgcgcggtttactatgccaccaagtttgacattgaaaaactttgaaaatttggatcttggaaagattgatgaggttggacccatttacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

9.69

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	2 cut(s)	150, 277
AciI	CCGC	5 cut(s)	144, 148, 150, 171, 277
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	319
AcyI	GRCGYC	2 cut(s)	19, 77
AfiI	CCNNNNNNNGG	2 cut(s)	94, 242
AgsI	TTSAA	2 cut(s)	307, 317
AluBI	AGCT	3 cut(s)	14, 115, 178
AluI	AGCT	3 cut(s)	14, 115, 178
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	145, 168
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	4 cut(s)	145, 148, 151, 171
BlsI	GCNGC	4 cut(s)	146, 149, 152, 172
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	62
BsaHI	GRCGYC	2 cut(s)	19, 77
BsaJI	CCNNGG	4 cut(s)	36, 148, 165, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 242
BseDI	CCNNGG	4 cut(s)	36, 148, 165, 236
BseLI	CCNNNNNNNGG	2 cut(s)	94, 242
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	249
BseX3I	CGGCCG	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	150, 277
Bsh1285I	CGRYCG	2 cut(s)	148, 157
BshFI	GGCC	2 cut(s)	147, 170
BsiEI	CGRYCG	2 cut(s)	148, 157
BsiHKCI	CYCGRG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	69, 266
BslI	CCNNNNNNNGG	2 cut(s)	94, 242
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	69, 266
BsnI	GGCC	2 cut(s)	147, 170
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	64, 154, 325
BspACI	CCGC	5 cut(s)	144, 148, 150, 171, 277
BspANI	GGCC	2 cut(s)	147, 170
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	150, 277
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	144
BssECI	CCNNGG	4 cut(s)	36, 148, 165, 236
BssMI	GATC	3 cut(s)	64, 154, 325
BssNI	GRCGYC	2 cut(s)	19, 77
BssT1I	CCWWGG	3 cut(s)	36, 165, 236
BstACI	GRCGYC	2 cut(s)	19, 77
BstBAI	YACGTR	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	148
BstFNI	CGCG	2 cut(s)	150, 277
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	67, 157, 328
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	64, 154, 325
BstMCI	CGRYCG	2 cut(s)	148, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 150
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	2 cut(s)	150, 277
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	147, 170
BtgI	CCRYGG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
CciNI	GCGGCCGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	151
CseI	GACGC	3 cut(s)	8, 66, 263
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	7 cut(s)	14, 115, 147, 170, 178, 200, 241
CviKI_1	RGCY	7 cut(s)	14, 115, 147, 170, 178, 200, 241
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	66, 156, 327
DpnII	GATC	3 cut(s)	64, 154, 325
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	36, 165, 236
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	350
Eco52I	CGGCCG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	3 cut(s)	36, 165, 236
ErhI	CCWWGG	3 cut(s)	36, 165, 236
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 287
FaqI	GGGAC	2 cut(s)	69, 266
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	145, 148, 151, 171
Fsp4HI	GCNGC	4 cut(s)	145, 148, 151, 171
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	4 cut(s)	145, 148, 151, 171
HaeIII	GGCC	2 cut(s)	147, 170
HgaI	GACGC	3 cut(s)	8, 66, 263
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	2 cut(s)	19, 77
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	176
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	32, 282
Hpy188I	TCNGA	2 cut(s)	82, 185
Hpy188III	TCNNGA	2 cut(s)	109, 265
Hpy8I	GTNNAC	2 cut(s)	32, 282
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	38, 180
HpyCH4IV	ACGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 150
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	2 cut(s)	19, 77
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	275
KspI	CCGCGG	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	64, 154, 325
LpnPI	CCDG	4 cut(s)	122, 186, 235, 255
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	66, 156, 327
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	3 cut(s)	64, 154, 325
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	60, 328
MnlI	CCTC	9 cut(s)	15, 34, 41, 67, 87, 131, 189, 230, 337
MspA1I	CMGCKG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	150, 277
MwoI	GCNNNNNNNGC	2 cut(s)	144, 150
NdeII	GATC	3 cut(s)	64, 154, 325
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	352
NotI	GCGGCCGC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	146, 149, 152, 172
Ple19I	CGATCG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	325
PvuI	CGATCG	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	151
SatI	GCNGC	4 cut(s)	145, 148, 151, 171
Sau3AI	GATC	3 cut(s)	64, 154, 325
Sau96I	GGNCC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	16, 52, 64, 117, 180, 274, 348
Sfr303I	CCGCGG	1 cut(s)	151
SgrBI	CCGCGG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	5 cut(s)	144, 148, 150, 171, 277
StyI	CCWWGG	3 cut(s)	36, 165, 236
TaiI	ACGT	1 cut(s)	64
TasI	AATT	1 cut(s)	319
TauI	GCSGC	4 cut(s)	147, 150, 153, 173
TscAI	CASTG	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.