Rroxscaffold_6G00392630

MOSC domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
12256027 .. 12256367
341 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00392630.1

Sequence Viewer

Length: 237 bp
ATGGATGTGCTGAAGGCTTCCTTGACTACACCACAAGAAATAGCAGATGTGGCTTCGGTATGGGAGTGGTGCGGTGCTGCGTTAGATAAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGAGGCAATAGCATCTTATGCTGTTATTTATGTGGTTAGATATCATCACATTATCACACTTGAACTAGGGGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

5.51

Isoelectric Point (pI)

18.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 2 cut(s) 72, 148
AcuI CTGAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 64
BfaI CTAG 3 cut(s) 125, 135, 224
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmsI GCATC 3 cut(s) 88, 110, 179
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 64
BspACI CCGC 2 cut(s) 72, 148
BstAPI GCANNNNNTGC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 50, 176
BstV1I GCAGC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 17, 53, 95
CviKI_1 RGCY 3 cut(s) 17, 53, 95
Eco32I GATATC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 103
FaiI YATR 3 cut(s) 61, 177, 189
FalI AAGNNNNNCTT 1 cut(s) 37
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 3 cut(s) 125, 135, 224
GluI GCNGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 101, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 176
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 3 cut(s) 88, 110, 179
MaeI CTAG 3 cut(s) 125, 135, 224
MnlI CCTC 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 50, 176
NsiI ATGCAT 1 cut(s) 103
PkrI GCNGC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 78
SetI ASST 2 cut(s) 97, 136
SfaNI GCATC 3 cut(s) 88, 110, 179
SgeI CNNG 6 cut(s) 34, 47, 137, 147, 155, 230
SmiMI CAYNNNNRTG 1 cut(s) 106
SsiI CCGC 2 cut(s) 72, 148
SspMI CTAG 3 cut(s) 125, 135, 224
TaqI TCGA 2 cut(s) 104, 139
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 3 cut(s) 125, 135, 224
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.