Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

17083110 .. 17084154

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTCTTCACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTCGAAAGTTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGTCAATCACTACATTACCAATTCTGTTAAAGGGCGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGCAGAGGGCCAAATTCCTGTTTTCTGGATGGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

121

Amino Acids

13.24

Weight (kDa)

5.31

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	5 - 117	2.2e-32	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	5 cut(s)	138, 233, 239, 269, 326
AluI	AGCT	5 cut(s)	138, 233, 239, 269, 326
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	239, 326
ApoI	RAATTY	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	226, 313
BccI	CCATC	1 cut(s)	349
BciVI	GTATCC	2 cut(s)	205, 265
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	240, 327
BfuI	GTATCC	2 cut(s)	205, 265
BisI	GCNGC	2 cut(s)	240, 327
BlsI	GCNGC	2 cut(s)	241, 328
BmgT120I	GGNCC	1 cut(s)	334
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	100
BseGI	GGATG	2 cut(s)	151, 360
BseJI	GATNNNNATC	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	148, 198
BseXI	GCAGC	2 cut(s)	226, 313
BshFI	GGCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	147, 199
BspMAI	CTGCAG	2 cut(s)	244, 331
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	129
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	134, 207
BstF5I	GGATG	2 cut(s)	151, 360
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 239
BstSFI	CTRYAG	2 cut(s)	240, 327
BstV1I	GCAGC	2 cut(s)	226, 313
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	2 cut(s)	205, 265
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	151, 360
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	138, 157, 233, 239, 269, 305, 326, 336
CviKI_1	RGCY	8 cut(s)	138, 157, 233, 239, 269, 305, 326, 336
DdeI	CTNAG	2 cut(s)	134, 207
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	23, 106, 108, 223, 227, 264, 285, 302
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	240, 327
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	240, 327
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	240, 327
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	93, 352
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	225, 242, 293, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 239
HpyF3I	CTNAG	2 cut(s)	134, 207
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	236, 266
LpnPI	CCDG	8 cut(s)	78, 99, 124, 219, 228, 303, 337, 357
Lsp1109I	GCAGC	2 cut(s)	226, 313
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	278
MalI	GATC	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	180, 198, 249, 339
MnlI	CCTC	3 cut(s)	202, 307, 325
Mph1103I	ATGCAT	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	135, 239
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	241, 328
Psp124BI	GAGCTC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	2 cut(s)	244, 331
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	240, 327
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	17, 140, 221, 235, 241, 271, 318, 328
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	240, 327
SfuI	TTCGAA	1 cut(s)	51
Sse9I	AATT	4 cut(s)	180, 198, 249, 339
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	271
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	180, 198, 249, 339
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseI	GCWGC	2 cut(s)	239, 326
XapI	RAATTY	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.