Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

17969337 .. 17972316

Gene Structure 2980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37244

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCATCCTCAACATCTCTGTCGGCGAAAGCAGCGATCGTCTCACCAAGGCGGCCAAGGTCTTGGAGCAACTCAGCTTGAAGACTAGCCCTACTATCGAAGACATCAAGAACATCCTTGGTGCCGAGAAGATGGAGCTGCTGGGATTGTTAATGATGGGTCTGAGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

64

Amino Acids

7.05

Weight (kDa)

8.07

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 39	2e-08	Ribosomal protein L5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	3 cut(s)	25, 99, 160
AluI	AGCT	3 cut(s)	25, 99, 160
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	54, 160
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	110, 129
BbvI	GCAGC	2 cut(s)	66, 147
BccI	CCATC	2 cut(s)	148, 172
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	3 cut(s)	55, 75, 161
BlsI	GCNGC	3 cut(s)	56, 76, 162
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	110, 129
BsaJI	CCNNGG	3 cut(s)	69, 78, 139
BseDI	CCNNGG	3 cut(s)	69, 78, 139
BseGI	GGATG	2 cut(s)	27, 135
BseMII	CTCAG	2 cut(s)	109, 176
BseXI	GCAGC	2 cut(s)	66, 147
BseYI	CCCAGC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	108, 177
BspLI	GGNNCC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	69, 78, 139
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	3 cut(s)	69, 78, 139
BstDEI	CTNAG	2 cut(s)	95, 185
BstF5I	GGATG	2 cut(s)	27, 135
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	66, 147
BstV2I	GAAGAC	2 cut(s)	110, 129
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	27, 135
Cfr13I	GGNCC	1 cut(s)	16
CviJI	RGCY	6 cut(s)	25, 77, 99, 111, 160, 189
CviKI_1	RGCY	6 cut(s)	25, 77, 99, 111, 160, 189
DdeI	CTNAG	2 cut(s)	95, 185
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	3 cut(s)	69, 78, 139
Eco47I	GGWCC	1 cut(s)	16
EcoT14I	CCWWGG	3 cut(s)	69, 78, 139
ErhI	CCWWGG	3 cut(s)	69, 78, 139
Esp3I	CGTCTC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	55, 75, 161
FokI	GGATG	2 cut(s)	14, 122
Fsp4HI	GCNGC	3 cut(s)	55, 75, 161
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	3 cut(s)	55, 75, 161
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	186, 194
Hpy188III	TCNNGA	2 cut(s)	19, 130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	95, 185
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	88, 157
LpnPI	CCDG	2 cut(s)	32, 149
Lsp1109I	GCAGC	2 cut(s)	66, 147
MaeI	CTAG	1 cut(s)	108
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	115, 134, 163
MnlI	CCTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	56, 76, 162
Ple19I	CGATCG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	55, 75, 161
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	5 cut(s)	18, 27, 84, 101, 162
SinI	GGWCC	1 cut(s)	16
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	69, 78, 139
TaqI	TCGA	1 cut(s)	120
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	2 cut(s)	54, 160
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.