Rmu_sc0004847.1_g000014

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004847.1
OG0000887
Physical Location & Seq
Reverse (-)
54626 .. 59737
5112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004847.1_g000014.1.cds

Sequence Viewer

Length: 1134 bp
atgcctctagagcaagttcccaatcctcaaaccgacacgatgcagcaacctttgaattccaagaaacttcgtctctctcaatctttccatcaaacacatcccacatttgccacacgcattgccaagggttgtaatggctcctcagaagagagtgaaccgggtttgggagcaaagggtttctatgccaatgaggcccgagtccaccacgcccaccactccaccgtcgatgtcgagctccaccatcgccgctccgtcccaccgtcggaccaccagaggatgacgccatctaactccacgatcccaacccctctgggcttcgccggttttgttcgtcagatgtccgggaagctctccacgccggaatcgggtctaggcttcccttgcaggtctcggacgacgtcaaaactgtggtctattgggggcctcgccgagtttctaagcgacgaggaccgttggcttggcatcgagcctggccgcggagagtacgacaacgagtttcggcgccgcgatggagagagcaggcatcgtgggggacctgctggagggatggagggagggagagagaaatccgacgtcggatctgtcattcacttttcagtattaaaagcacctggcatggatgtactgaagatttctatgagtccaccacaagaaatagcagatggaatttcaatatgggaatggtctggtgctgccttagatgagggagccgatgcatcaaaatggttttcagactatcttgggaaacctagtcgacttgttcgctttaatgcagcttcagaaactagacctgtgaaaccgtccttttggtctcataaacctgtggaacctgaatatgctggggggaagcaaatcatgttctccgacctttttccatacttgatagcgtctcagataccttcggtgaatcaagagactggcattcaaggaactgagccaaatgaaactctcaagaaatttcaatcggatgcaattgtttatccatctcggaaacagcgtagaagggtctacttcgggcagtatctagtttgcaaagactctcttattgccagcgtgaagggaaatatcataaagattggagatcttgttcatgtcctcaacatggtttcctctgctgatgaagttgcggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

377

Amino Acids

41.6

Weight (kDa)

7.24

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 401, 576
Acc36I ACCTGC 2 cut(s) 375, 544
AccB1I GGYRCC 1 cut(s) 501
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 2 cut(s) 754, 1008
AccII CGCG 2 cut(s) 477, 507
AciI CCGC 5 cut(s) 247, 475, 477, 505, 1127
AclWI GGATC 2 cut(s) 292, 586
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 3 cut(s) 55, 666, 956
AcuI CTGAAG 2 cut(s) 647, 762
AcyI GRCGYC 4 cut(s) 281, 398, 502, 573
AfaI GTAC 2 cut(s) 485, 624
AfiI CCNNNNNNNGG 6 cut(s) 164, 262, 365, 476, 542, 1102
AgsI TTSAA 4 cut(s) 55, 672, 926, 962
AjnI CCWGG 2 cut(s) 469, 610
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
AluBI AGCT 3 cut(s) 235, 349, 776
AluI AGCT 3 cut(s) 235, 349, 776
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 5 cut(s) 77, 393, 816, 894, 908
AlwI GGATC 2 cut(s) 292, 586
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 3 cut(s) 192, 421, 472
ApeKI GCWGC 3 cut(s) 43, 692, 773
ApoI RAATTY 3 cut(s) 55, 666, 956
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 5 cut(s) 193, 265, 421, 448, 533
AsuC2I CCSGG 2 cut(s) 159, 343
AsuHPI GGTGA 1 cut(s) 916
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 3 cut(s) 265, 448, 533
BanI GGYRCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 55, 679, 785
BccI CCATC 7 cut(s) 96, 249, 292, 503, 541, 656, 991
BciT130I CCWGG 2 cut(s) 471, 612
BcnI CCSGG 2 cut(s) 159, 343
BcoDI GTCTC 5 cut(s) 77, 393, 816, 894, 908
BfaI CTAG 5 cut(s) 8, 371, 750, 786, 1025
BfoI RGCGCY 1 cut(s) 505
BfuAI ACCTGC 2 cut(s) 375, 544
BglI GCCNNNNNGGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 1081
BisI GCNGC 6 cut(s) 44, 247, 475, 505, 693, 774
BlsI GCNGC 6 cut(s) 45, 248, 476, 506, 694, 775
Bme1390I CCNGG 4 cut(s) 159, 343, 471, 612
Bme18I GGWCC 3 cut(s) 265, 448, 533
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 5 cut(s) 193, 265, 421, 448, 533
BmiI GGNNCC 6 cut(s) 139, 422, 503, 534, 709, 828
BmrFI CCNGG 4 cut(s) 159, 343, 471, 612
BmsI GCATC 6 cut(s) 30, 471, 532, 703, 725, 958
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 2 cut(s) 159, 343
BsaHI GRCGYC 4 cut(s) 281, 398, 502, 573
BsaI GGTCTC 2 cut(s) 393, 816
BsaJI CCNNGG 2 cut(s) 123, 475
BsaXI ACNNNNNCTCC 2 cut(s) 1071, 1101
Bsc4I CCNNNNNNNGG 6 cut(s) 164, 262, 365, 476, 542, 1102
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 471, 612
BseDI CCNNGG 2 cut(s) 123, 475
BseGI GGATG 5 cut(s) 97, 282, 552, 625, 973
BseLI CCNNNNNNNGG 6 cut(s) 164, 262, 365, 476, 542, 1102
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 156, 905, 924
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 3 cut(s) 55, 679, 785
BseYI CCCAGC 1 cut(s) 839
Bsh1236I CGCG 2 cut(s) 477, 507
BshFI GGCC 3 cut(s) 194, 423, 474
BshNI GGYRCC 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 4 cut(s) 158, 321, 342, 359
BslFI GGGAC 2 cut(s) 239, 546
BslI CCNNNNNNNGG 6 cut(s) 164, 262, 365, 476, 542, 1102
BsmAI GTCTC 5 cut(s) 77, 393, 816, 894, 908
BsmBI CGTCTC 2 cut(s) 77, 894
BsmFI GGGAC 2 cut(s) 239, 546
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 3 cut(s) 194, 423, 474
Bso31I GGTCTC 2 cut(s) 393, 816
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 297, 578, 1081
BspACI CCGC 5 cut(s) 247, 475, 477, 505, 1127
BspANI GGCC 3 cut(s) 194, 423, 474
BspCNI CTCAG 3 cut(s) 155, 904, 925
BspFNI CGCG 2 cut(s) 477, 507
BspLI GGNNCC 6 cut(s) 139, 422, 503, 534, 709, 828
BspMI ACCTGC 2 cut(s) 375, 544
BspPI GGATC 2 cut(s) 292, 586
BspT107I GGYRCC 1 cut(s) 501
BspTNI GGTCTC 2 cut(s) 393, 816
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 922
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 123, 475
BssMI GATC 3 cut(s) 297, 578, 1081
BssNI GRCGYC 4 cut(s) 281, 398, 502, 573
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 471, 612
Bst4CI ACNGT 5 cut(s) 223, 261, 408, 452, 801
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 4 cut(s) 281, 398, 502, 573
BstC8I GCNNGC 2 cut(s) 521, 1051
BstDEI CTNAG 5 cut(s) 142, 437, 697, 891, 933
BstDSI CCRYGG 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 540
BstF5I GGATG 5 cut(s) 97, 282, 552, 625, 973
BstFNI CGCG 2 cut(s) 477, 507
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 3 cut(s) 300, 581, 1084
BstMAI GTCTC 5 cut(s) 77, 393, 816, 894, 908
BstMBI GATC 3 cut(s) 297, 578, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 10, 191, 355, 381
BstNI CCWGG 2 cut(s) 471, 612
BstSCI CCNGG 4 cut(s) 157, 341, 469, 610
BstUI CGCG 2 cut(s) 477, 507
BstV1I GCAGC 3 cut(s) 55, 679, 785
BstX2I RGATCY 2 cut(s) 578, 1081
BstYI RGATCY 2 cut(s) 578, 1081
BsuRI GGCC 3 cut(s) 194, 423, 474
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 2 cut(s) 227, 522
BtsCI GGATG 5 cut(s) 97, 282, 552, 625, 973
BveI ACCTGC 2 cut(s) 375, 544
Cac8I GCNNGC 2 cut(s) 521, 1051
CfoI GCGC 1 cut(s) 504
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 5 cut(s) 193, 265, 421, 448, 533
Cfr42I CCGCGG 1 cut(s) 478
CseI GACGC 2 cut(s) 289, 876
Csp6I GTAC 2 cut(s) 484, 623
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 4 cut(s) 616, 856, 1091, 1102
CviQI GTAC 2 cut(s) 484, 623
DdeI CTNAG 5 cut(s) 142, 437, 697, 891, 933
DinI GGCGCC 1 cut(s) 503
DpnI GATC 3 cut(s) 299, 580, 1083
DpnII GATC 3 cut(s) 297, 578, 1081
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 2 cut(s) 393, 816
Eco47I GGWCC 3 cut(s) 265, 448, 533
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 647, 762
Eco88I CYCGRG 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoO109I RGGNCCY 2 cut(s) 421, 533
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 469, 610
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 2 cut(s) 77, 894
FaeI CATG 4 cut(s) 619, 859, 1094, 1105
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 2 cut(s) 239, 546
FatI CATG 4 cut(s) 615, 855, 1090, 1101
FblI GTMKAC 2 cut(s) 754, 1008
Fnu4HI GCNGC 6 cut(s) 44, 247, 475, 505, 693, 774
FokI GGATG 5 cut(s) 84, 289, 559, 632, 980
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 6 cut(s) 44, 247, 475, 505, 693, 774
FspBI CTAG 5 cut(s) 8, 371, 750, 786, 1025
GlaI GCGC 1 cut(s) 503
GluI GCNGC 6 cut(s) 44, 247, 475, 505, 693, 774
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 3 cut(s) 194, 423, 474
HapII CCGG 4 cut(s) 158, 321, 342, 359
HgaI GACGC 2 cut(s) 289, 876
HhaI GCGC 1 cut(s) 504
Hin1I GRCGYC 4 cut(s) 281, 398, 502, 573
Hin1II CATG 4 cut(s) 619, 859, 1094, 1105
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 1 cut(s) 755
HindII GTYRAC 1 cut(s) 755
HinfI GANTC 5 cut(s) 198, 362, 640, 907, 1037
HpaII CCGG 4 cut(s) 158, 321, 342, 359
HphI GGTGA 1 cut(s) 916
Hpy166II GTNNAC 5 cut(s) 155, 202, 644, 755, 1009
Hpy188III TCNNGA 3 cut(s) 8, 911, 952
Hpy8I GTNNAC 5 cut(s) 155, 202, 644, 755, 1009
Hpy99I CGWCG 6 cut(s) 227, 265, 400, 446, 575, 578
HpyAV CCTTC 3 cut(s) 909, 996, 1051
HpyCH4III ACNGT 5 cut(s) 223, 261, 408, 452, 801
HpyCH4IV ACGT 2 cut(s) 398, 573
HpyCH4V TGCA 6 cut(s) 43, 384, 716, 773, 971, 1032
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 191, 355, 381
HpyF3I CTNAG 5 cut(s) 142, 437, 697, 891, 933
HpySE526I ACGT 2 cut(s) 398, 573
Hsp92I GRCGYC 4 cut(s) 281, 398, 502, 573
Hsp92II CATG 4 cut(s) 619, 859, 1094, 1105
HspAI GCGC 1 cut(s) 502
KasI GGCGCC 1 cut(s) 501
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 3 cut(s) 297, 578, 1081
LmnI GCTCC 5 cut(s) 143, 167, 240, 254, 707
Lsp1109I GCAGC 3 cut(s) 55, 679, 785
LweI GCATC 6 cut(s) 30, 471, 532, 703, 725, 958
MaeI CTAG 5 cut(s) 8, 371, 750, 786, 1025
MaeII ACGT 2 cut(s) 398, 573
MalI GATC 3 cut(s) 299, 580, 1083
MbiI CCGCTC 1 cut(s) 249
MboI GATC 3 cut(s) 297, 578, 1081
MboII GAAGA 2 cut(s) 158, 640
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 2 cut(s) 578, 1081
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 55, 666, 956, 972
Mly113I GGCGCC 1 cut(s) 502
MlyI GAGTC 3 cut(s) 207, 649, 1031
MmeI TCCRAC 4 cut(s) 243, 556, 594, 888
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 2 cut(s) 602, 768
MslI CAYNNNNRTG 1 cut(s) 721
MspA1I CMGCKG 1 cut(s) 477
MspI CCGG 4 cut(s) 158, 321, 342, 359
MspR9I CCNGG 4 cut(s) 159, 343, 471, 612
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 2 cut(s) 471, 612
MvnI CGCG 2 cut(s) 477, 507
MwoI GCNNNNNNNGC 4 cut(s) 10, 191, 355, 381
NarI GGCGCC 1 cut(s) 502
NciI CCSGG 2 cut(s) 159, 343
NdeII GATC 3 cut(s) 297, 578, 1081
NlaIII CATG 4 cut(s) 619, 859, 1094, 1105
NlaIV GGNNCC 6 cut(s) 139, 422, 503, 534, 709, 828
NmeAIII GCCGAG 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 994
PctI GAATGC 1 cut(s) 921
PfeI GAWTC 2 cut(s) 362, 907
PflFI GACNNNGTC 1 cut(s) 397
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 6 cut(s) 45, 248, 476, 506, 694, 775
PleI GAGTC 3 cut(s) 206, 648, 1031
PluTI GGCGCC 1 cut(s) 505
PpsI GAGTC 3 cut(s) 206, 648, 1031
PpuMI RGGWCCY 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 469, 610
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 469, 610
PspN4I GGNNCC 6 cut(s) 139, 422, 503, 534, 709, 828
PspPI GGNCC 5 cut(s) 193, 265, 421, 448, 533
PspPPI RGGWCCY 1 cut(s) 533
PsuI RGATCY 2 cut(s) 578, 1081
PsyI GACNNNGTC 1 cut(s) 397
RsaI GTAC 2 cut(s) 485, 624
RsaNI GTAC 2 cut(s) 484, 623
RseI CAYNNNNRTG 1 cut(s) 721
SacI GAGCTC 1 cut(s) 237
SacII CCGCGG 1 cut(s) 478
SalI GTCGAC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 602, 768
SatI GCNGC 6 cut(s) 44, 247, 475, 505, 693, 774
Sau3AI GATC 3 cut(s) 297, 578, 1081
Sau96I GGNCC 5 cut(s) 193, 265, 421, 448, 533
SchI GAGTC 3 cut(s) 207, 649, 1031
ScrFI CCNGG 4 cut(s) 159, 343, 471, 612
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 6 cut(s) 30, 471, 532, 703, 725, 958
SfoI GGCGCC 1 cut(s) 503
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SinI GGWCC 3 cut(s) 265, 448, 533
SmiMI CAYNNNNRTG 1 cut(s) 721
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 4 cut(s) 55, 666, 956, 972
SsiI CCGC 5 cut(s) 247, 475, 477, 505, 1127
SspDI GGCGCC 1 cut(s) 501
SspMI CTAG 5 cut(s) 8, 371, 750, 786, 1025
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 4 cut(s) 157, 341, 469, 610
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 5 cut(s) 223, 261, 408, 452, 801
TaiI ACGT 2 cut(s) 401, 576
TaqI TCGA 4 cut(s) 225, 231, 465, 754
TasI AATT 4 cut(s) 55, 666, 956, 972
TatI WGTACW 1 cut(s) 622
TauI GCSGC 3 cut(s) 249, 477, 507
TfiI GAWTC 2 cut(s) 362, 907
Tru1I TTAA 2 cut(s) 602, 768
Tru9I TTAA 2 cut(s) 602, 768
TseI GCWGC 3 cut(s) 43, 692, 773
TspDTI ATGAA 3 cut(s) 957, 1079, 1134
TspGWI ACGGA 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 265, 448, 533
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 3 cut(s) 55, 666, 956
XbaI TCTAGA 1 cut(s) 7
XmiI GTMKAC 2 cut(s) 754, 1008
XspI CTAG 5 cut(s) 8, 371, 750, 786, 1025
ZraI GACGTC 2 cut(s) 399, 574
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.