Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

86827699 .. 86829586

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGTCGGAGAAGAAGCTCGCGAACCCCATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAGGGCCGCCAAGGTCTTGGAGCAACTCAGCGGCCAGACCCCTGTTTTCTCCAAAGCTCGGTACACCGTGAGGTATGACCCTTCCACCGGTATCTACGGTATGGACTTCTATGTTGTTCTTGAGCGCCCAGGGTACCGTGTTGGCCGTCGCCGCAGGTGCAAGGCCCGTGTTGGAATTCAGCACAGAGTTACAAAGGATGATGCAATGAAGTGGTTCCAAGTGAAATACGAGGGAGTCATCCTTAACAAGTCCCAAGCAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

121

Amino Acids

13.85

Weight (kDa)

10.24

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 57	5.2e-18	Ribosomal protein L5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	23
AciI	CCGC	4 cut(s)	84, 105, 129, 250
AcoI	YGGCCR	2 cut(s)	130, 241
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	161, 233
AfiI	CCNNNNNNNGG	3 cut(s)	34, 156, 185
AgeI	ACCGGT	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	98, 226
AluBI	AGCT	3 cut(s)	19, 55, 155
AluI	AGCT	3 cut(s)	19, 55, 155
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	4 cut(s)	102, 130, 241, 261
ApoI	RAATTY	1 cut(s)	273
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	46, 102, 262
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	100, 228
BcoDI	GTCTC	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	4 cut(s)	85, 105, 130, 250
BlsI	GCNGC	4 cut(s)	86, 106, 131, 251
Bme1390I	CCNGG	2 cut(s)	100, 228
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	46, 102, 262
BmiI	GGNNCC	2 cut(s)	233, 314
BmrFI	CCNGG	2 cut(s)	100, 228
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	99, 108, 226, 227
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 156, 185
Bse118I	RCCGGY	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	100, 228
BseDI	CCNNGG	4 cut(s)	99, 108, 226, 227
BseGI	GGATG	2 cut(s)	301, 336
BseLI	CCNNNNNNNGG	3 cut(s)	34, 156, 185
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	104, 132, 243, 263
BshNI	GGYRCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	34, 156, 185
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	104, 132, 243, 263
Bsp143I	GATC	1 cut(s)	88
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	4 cut(s)	84, 105, 129, 250
BspANI	GGCC	4 cut(s)	104, 132, 243, 263
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	233, 314
BspMI	ACCTGC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	99, 108, 226, 227
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	100, 228
Bst4CI	ACNGT	3 cut(s)	166, 197, 236
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	301, 336
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	88
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 249, 255
BstNI	CCWGG	2 cut(s)	100, 228
BstSCI	CCNGG	2 cut(s)	98, 226
BstUI	CGCG	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	104, 132, 243, 263
BtsCI	GGATG	2 cut(s)	301, 336
BtuMI	TCGCGA	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	46, 102, 262
Csp6I	GTAC	2 cut(s)	160, 232
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	19, 55, 104, 132, 155, 243, 263
CviKI_1	RGCY	7 cut(s)	19, 55, 104, 132, 155, 243, 263
CviQI	GTAC	2 cut(s)	160, 232
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	130, 241
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	98, 226
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	34
FaiI	YATR	4 cut(s)	32, 174, 200, 210
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	85, 105, 130, 250
FokI	GGATG	2 cut(s)	308, 323
Fsp4HI	GCNGC	4 cut(s)	85, 105, 130, 250
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	4 cut(s)	85, 105, 130, 250
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	104, 132, 243, 263
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	22, 49, 218
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	3 cut(s)	10, 77, 249
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	3 cut(s)	166, 197, 236
HpyCH4V	TGCA	2 cut(s)	258, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 249, 255
HpyF3I	CTNAG	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	62, 85, 112, 146, 153, 199, 213, 238, 240
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	90
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	2 cut(s)	273, 357
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	4 cut(s)	27, 71, 162, 322
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	100, 228
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	100, 228
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	84, 249, 255
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	233, 314
NruI	TCGCGA	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	243
PasI	CCCWGGG	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	86, 106, 131, 251
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	98, 226
PspGI	CCWGG	2 cut(s)	98, 226
PspN4I	GGNNCC	2 cut(s)	233, 314
PspPI	GGNCC	3 cut(s)	46, 102, 262
PvuI	CGATCG	1 cut(s)	91
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	2 cut(s)	161, 233
RsaNI	GTAC	2 cut(s)	160, 232
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	85, 105, 130, 250
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	46, 102, 262
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	100, 228
SetI	ASST	7 cut(s)	21, 48, 57, 114, 157, 173, 257
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	273, 357
SsiI	CCGC	4 cut(s)	84, 105, 129, 250
StyD4I	CCNGG	2 cut(s)	98, 226
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	166, 197, 236
TasI	AATT	2 cut(s)	273, 357
TauI	GCSGC	4 cut(s)	87, 107, 132, 252
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.