Rh4AG000400

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
126861 .. 128358
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG000400.1

Sequence Viewer

Length: 360 bp
ATGGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAATGAAGTATTTAAACTGTCTCGTGGTGAATATGTTGCTGTGGAAAGCGTTGAAAGCAAATACTTGCATTTCTACCTGGCTGGAGCAAGAGCAACATATCGACACTATCACATCATTTGCTACCAAAACTCTGAAAATAAATTTAATACTTGCGCTCTTGATCGTAATAGTTTTGTTTCTTTCTACCCCTCTACAGATTCAGTTTCTCTTGGAGCTGCATTGAGGGCTGTTCATGGTTGGCTATGCAGCCAGCGCAAAAGGTACTTTTGTGGGAAAGATCCAAACTTGAACGATGAGAGTCGTGAATTGTGA

Protein Analysis

119

Amino Acids

13.75

Weight (kDa)

8.69

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 2 cut(s) 101, 337
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 320
ApeKI GCWGC 3 cut(s) 13, 263, 294
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 2 cut(s) 203, 303
AsuHPI GGTGA 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 3 cut(s) 25, 250, 306
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 14, 264, 295
BlsI GCNGC 3 cut(s) 15, 265, 296
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 33
BseXI GCAGC 3 cut(s) 25, 250, 306
BsmAI GTCTC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 208, 325
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 2 cut(s) 208, 325
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 299
BstHHI GCGC 2 cut(s) 203, 303
BstKTI GATC 2 cut(s) 211, 328
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 208, 325
BstMWI GCNNNNNNNGC 3 cut(s) 102, 272, 300
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 25, 250, 306
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 2 cut(s) 203, 303
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 281
CviJI RGCY 6 cut(s) 16, 128, 263, 275, 289, 297
CviKI_1 RGCY 6 cut(s) 16, 128, 263, 275, 289, 297
CviQI GTAC 1 cut(s) 310
DpnI GATC 2 cut(s) 210, 327
DpnII GATC 2 cut(s) 208, 325
DraI TTTAAA 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 38, 81, 145, 282, 292
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 14, 264, 295
Fsp4HI GCNGC 3 cut(s) 14, 264, 295
GlaI GCGC 2 cut(s) 202, 302
GluI GCNGC 3 cut(s) 14, 264, 295
GsuI CTGGAG 1 cut(s) 150
HhaI GCGC 2 cut(s) 203, 303
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 2 cut(s) 201, 301
HinP1I GCGC 2 cut(s) 201, 301
HinfI GANTC 2 cut(s) 245, 346
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 206, 350
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 115, 266, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 272, 300
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 2 cut(s) 201, 301
Kzo9I GATC 2 cut(s) 208, 325
LmnI GCTCC 3 cut(s) 23, 131, 260
LpnPI CCDG 5 cut(s) 28, 110, 114, 137, 311
Lsp1109I GCAGC 3 cut(s) 25, 250, 306
MalI GATC 2 cut(s) 210, 327
MboI GATC 2 cut(s) 208, 325
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 188, 353
MlyI GAGTC 1 cut(s) 355
MnlI CCTC 2 cut(s) 247, 264
MseI TTAA 2 cut(s) 60, 192
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 102, 272, 300
NdeII GATC 2 cut(s) 208, 325
NlaIII CATG 1 cut(s) 284
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 15, 265, 296
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 60, 192
SatI GCNGC 3 cut(s) 14, 264, 295
Sau3AI GATC 2 cut(s) 208, 325
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 125
SetI ASST 3 cut(s) 126, 265, 311
SfcI CTRYAG 1 cut(s) 240
Sse9I AATT 2 cut(s) 188, 353
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 148
TasI AATT 2 cut(s) 188, 353
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 60, 192
Tru9I TTAA 2 cut(s) 60, 192
TseI GCWGC 3 cut(s) 13, 263, 294
TspDTI ATGAA 3 cut(s) 44, 66, 269
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.