RchiOBHm_Chr6g0272271

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000887
Physical Location & Seq
Forward (+)
32463642 .. 32464597
956 bp
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UTR
Exon/CDS
Intron
PRQ24426

Sequence Viewer

Length: 357 bp
ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGATGATGCATCAAAATGGTTTTCGGCCTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGACCTTGTCATTGTACTTTTGCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTTAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCTGAAGATTTATGGACAGATTTCAGAATAAACAATTTCACATTTCAATGTTGCATGCTGTGCTTCCGTTGTCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

4.47

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 2 - 45 6.6e-06 MOSC N-terminal beta barrel domain
MOSC PF03473 56 - 117 1.7e-12 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 32, 233, 300
AfaI GTAC 3 cut(s) 9, 174, 225
AfiI CCNNNNNNNGG 2 cut(s) 126, 349
AgsI TTSAA 2 cut(s) 57, 323
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 217
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 1 cut(s) 135
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 4 cut(s) 88, 110, 194, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 349
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 126, 349
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 126, 349
BsnI GGCC 1 cut(s) 119
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 236, 263
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 183, 332
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 64
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 183, 332
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 3 cut(s) 8, 173, 224
CviAII CATG 1 cut(s) 331
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
CviQI GTAC 3 cut(s) 8, 173, 224
DdeI CTNAG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 32, 233, 300
EcoO109I RGGNCCY 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 1 cut(s) 334
FaiI YATR 5 cut(s) 23, 61, 289, 332, 355
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 2 cut(s) 140, 259
HindII GTYRAC 2 cut(s) 140, 259
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 4 cut(s) 29, 140, 259, 269
Hpy188I TCNGA 3 cut(s) 213, 280, 302
Hpy8I GTNNAC 4 cut(s) 29, 140, 259, 269
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 236, 263
HpyCH4V TGCA 4 cut(s) 101, 158, 181, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 1 cut(s) 334
LpnPI CCDG 4 cut(s) 57, 167, 234, 335
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 4 cut(s) 88, 110, 194, 217
MaeI CTAG 1 cut(s) 135
MboII GAAGA 2 cut(s) 25, 293
MluCI AATT 2 cut(s) 228, 310
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 82
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 2 cut(s) 153, 231
MslI CAYNNNNRTG 2 cut(s) 106, 322
MwoI GCNNNNNNNGC 1 cut(s) 336
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 3 cut(s) 9, 174, 225
RsaNI GTAC 3 cut(s) 8, 173, 224
RseI CAYNNNNRTG 2 cut(s) 106, 322
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 231
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 34
SetI ASST 3 cut(s) 136, 165, 354
SfaNI GCATC 4 cut(s) 88, 110, 194, 217
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 2 cut(s) 106, 322
SphI GCATGC 1 cut(s) 334
Sse9I AATT 2 cut(s) 228, 310
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 236, 263
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 228, 310
TatI WGTACW 2 cut(s) 7, 172
Tru1I TTAA 2 cut(s) 153, 231
Tru9I TTAA 2 cut(s) 153, 231
TseI GCWGC 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 332
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 217
XceI RCATGY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.