RchiOBHm_Chr4g0396471

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000887
Physical Location & Seq
Reverse (-)
12624869 .. 12625816
948 bp
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UTR
Exon/CDS
Intron
PRQ36884

Sequence Viewer

Length: 432 bp
ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAAATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAATTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCATATTTCAATGTTGCATACTGTGCTTCCCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

143

Amino Acids

16.23

Weight (kDa)

4.95

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 78 - 143 3.6e-07 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 32, 147, 329
AfaI GTAC 2 cut(s) 9, 321
AgsI TTSAA 2 cut(s) 57, 404
AluBI AGCT 2 cut(s) 95, 161
AluI AGCT 2 cut(s) 95, 161
Alw26I GTCTC 2 cut(s) 201, 279
ApeKI GCWGC 2 cut(s) 77, 158
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 64, 170
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 201, 279
BfaI CTAG 2 cut(s) 135, 171
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 2 cut(s) 78, 159
BlsI GCNGC 2 cut(s) 79, 160
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 315
BmsI GCATC 4 cut(s) 88, 110, 290, 313
BoxI GACNNNNGTC 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 201
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 64, 170
BseYI CCCAGC 1 cut(s) 224
BsmAI GTCTC 2 cut(s) 201, 279
BsmBI CGTCTC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 213, 315
BspTNI GGTCTC 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 186, 332, 417
BstAPI GCANNNNNTGC 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 201, 279
BstMWI GCNNNNNNNGC 2 cut(s) 278, 417
BstPAI GACNNNNGTC 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 64, 170
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 8, 320
CviAII CATG 1 cut(s) 241
CviJI RGCY 2 cut(s) 95, 161
CviKI_1 RGCY 2 cut(s) 95, 161
CviQI GTAC 2 cut(s) 8, 320
DdeI CTNAG 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 32, 147, 329
EcoO109I RGGNCCY 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 244
FaiI YATR 9 cut(s) 23, 61, 201, 222, 242, 262, 370, 398, 413
FatI CATG 1 cut(s) 240
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 78, 159
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 78, 159
FspBI CTAG 2 cut(s) 135, 171
GluI GCNGC 2 cut(s) 78, 159
GsaI CCCAGC 1 cut(s) 228
HgaI GACGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 29, 140, 350
Hpy188I TCNGA 7 cut(s) 118, 166, 250, 309, 338, 361, 383
Hpy8I GTNNAC 3 cut(s) 29, 140, 350
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 3 cut(s) 186, 332, 417
HpyCH4V TGCA 3 cut(s) 101, 158, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 417
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 244
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 57, 189, 210, 219, 228, 263, 330
Lsp1109I GCAGC 2 cut(s) 64, 170
LweI GCATC 4 cut(s) 88, 110, 290, 313
MaeI CTAG 2 cut(s) 135, 171
MboII GAAGA 2 cut(s) 25, 374
MfeI CAATTG 1 cut(s) 343
MluCI AATT 3 cut(s) 324, 343, 391
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 1 cut(s) 82
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 3 cut(s) 83, 153, 327
MslI CAYNNNNRTG 1 cut(s) 106
MunI CAATTG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 278, 417
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 213, 315
NsiI ATGCAT 1 cut(s) 103
PkrI GCNGC 2 cut(s) 79, 160
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 213, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 9, 321
RsaNI GTAC 2 cut(s) 8, 320
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 83, 153, 327
SatI GCNGC 2 cut(s) 78, 159
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 34
SetI ASST 7 cut(s) 97, 136, 163, 178, 208, 217, 255
SfaNI GCATC 4 cut(s) 88, 110, 290, 313
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 3 cut(s) 324, 343, 391
SspMI CTAG 2 cut(s) 135, 171
TaaI ACNGT 3 cut(s) 186, 332, 417
TaqI TCGA 1 cut(s) 139
TasI AATT 3 cut(s) 324, 343, 391
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 3 cut(s) 83, 153, 327
Tru9I TTAA 3 cut(s) 83, 153, 327
TseI GCWGC 2 cut(s) 77, 158
TspDTI ATGAA 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 2 cut(s) 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.