Rroxscaffold_2G00111930

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000887
Physical Location & Seq
Forward (+)
36804458 .. 36829489
25032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111930.1

Sequence Viewer

Length: 456 bp
ATGAAGATGGTTCTTGTTCTAAATCTGGAAGGAAAAGTTGGATATGTAGAGAGGGATAACAGTATGTGGTGGGTTGAGCACAAAATATTGGTTCAGAATCGAAAGGAAAGGAAACATGAAGGTCCGAAGCTCGTCCTTAACATCTTTGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGGAGCAACTCGGCGGCCGGACCCCTGTTTTCTCCAAAGCTCCCACAACTTCAGTTGCCATTGAGCTACTAGATGCTTCCATCGGTTTTCTTCTTTCGTTACGCTATTTGCAAAGAAGAGCGTGTAGGCTTGCCATCGCTATTGAGGTCCAAAGAACAAGTCTCCTGCCAGTTCCTGGAAAAAAAAATTCGGTTCCTGGATCCCGGGATCAAGACACTACTACAAAAAAAACAAAAAAAACTCTTTTTGAGAGGATAGGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0004857 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0008097 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0019899 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0030867 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031329 GO:0031330 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031984 GO:0032092 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042175 GO:0042176 GO:0042177 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0042886 GO:0042975 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043393 GO:0043433 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044389 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0045861 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050821 GO:0051090 GO:0051098 GO:0051099 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051252 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051641 GO:0051649 GO:0055105 GO:0055106 GO:0060255 GO:0061136 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098772 GO:0098827 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901796 GO:1901798 GO:1901799 GO:1902253 GO:1902255 GO:1902531 GO:1902533 GO:1903050 GO:1903051 GO:1903320 GO:1903321 GO:1903362 GO:1903363 GO:1903506 GO:1904666 GO:1904667 GO:1990904 GO:1990948 GO:2000058 GO:2000059 GO:2000112 GO:2000434 GO:2000435 GO:2001141 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko03010 ko04340 ko04341 map03010 map04340 map04341
Pfam Domains
Protein Families
Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

10.14

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L5 PF00281 43 - 79 3.9e-09 Ribosomal protein L5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 159
AciI CCGC 3 cut(s) 159, 180, 204
AclWI GGATC 3 cut(s) 384, 397, 405
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 365
AjnI CCWGG 2 cut(s) 364, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 3 cut(s) 130, 230, 256
AluI AGCT 3 cut(s) 130, 230, 256
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 173, 356
AlwI GGATC 3 cut(s) 384, 397, 405
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 177, 205
ApoI RAATTY 1 cut(s) 376
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspS9I GGNCC 3 cut(s) 122, 210, 337
AsuC2I CCSGG 2 cut(s) 394, 395
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 3 cut(s) 122, 210, 337
BamHI GGATCC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 2 cut(s) 278, 332
BciT130I CCWGG 2 cut(s) 366, 387
BcnI CCSGG 2 cut(s) 394, 395
BcoDI GTCTC 2 cut(s) 173, 356
BfaI CTAG 1 cut(s) 260
BisI GCNGC 3 cut(s) 160, 180, 205
BlsI GCNGC 3 cut(s) 161, 181, 206
Bme1390I CCNGG 4 cut(s) 366, 387, 394, 395
Bme18I GGWCC 3 cut(s) 122, 210, 337
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 3 cut(s) 122, 210, 337
BmiI GGNNCC 3 cut(s) 212, 384, 391
BmrFI CCNGG 4 cut(s) 366, 387, 394, 395
BmsI GCATC 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 394, 395
BsaJI CCNNGG 3 cut(s) 174, 183, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 366, 387
BseDI CCNNGG 3 cut(s) 174, 183, 393
BseLI CCNNNNNNNGG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 205
Bsh1285I CGRYCG 2 cut(s) 166, 208
BshFI GGCC 2 cut(s) 179, 207
BsiEI CGRYCG 2 cut(s) 166, 208
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 2 cut(s) 208, 394
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 173, 356
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 2 cut(s) 179, 207
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 163, 389, 397
BspACI CCGC 3 cut(s) 159, 180, 204
BspANI GGCC 2 cut(s) 179, 207
BspLI GGNNCC 3 cut(s) 212, 384, 391
BspPI GGATC 3 cut(s) 384, 397, 405
BspQI GCTCTTC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 174, 183, 393
BssMI GATC 3 cut(s) 163, 389, 397
BssT1I CCWWGG 2 cut(s) 174, 183
Bst2UI CCWGG 2 cut(s) 366, 387
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 166, 392, 400
BstMAI GTCTC 2 cut(s) 173, 356
BstMBI GATC 3 cut(s) 163, 389, 397
BstMCI CGRYCG 2 cut(s) 166, 208
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 366, 387
BstSCI CCNGG 4 cut(s) 364, 385, 392, 393
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 389
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 2 cut(s) 179, 207
BtgZI GCGATG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 122, 210, 337
Cfr9I CCCGGG 1 cut(s) 393
CviAII CATG 1 cut(s) 116
CviJI RGCY 6 cut(s) 130, 179, 207, 230, 256, 319
CviKI_1 RGCY 6 cut(s) 130, 179, 207, 230, 256, 319
DpnI GATC 3 cut(s) 165, 391, 399
DpnII GATC 3 cut(s) 163, 389, 397
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 174, 183
Eco47I GGWCC 3 cut(s) 122, 210, 337
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 364, 385
EcoT14I CCWWGG 2 cut(s) 174, 183
ErhI CCWWGG 2 cut(s) 174, 183
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 119
FaiI YATR 3 cut(s) 45, 65, 117
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 160, 180, 205
Fsp4HI GCNGC 3 cut(s) 160, 180, 205
FspBI CTAG 1 cut(s) 260
GluI GCNGC 3 cut(s) 160, 180, 205
HaeIII GGCC 2 cut(s) 179, 207
HapII CCGG 2 cut(s) 208, 394
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 97
HpaII CCGG 2 cut(s) 208, 394
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 96, 126
Hpy188III TCNNGA 2 cut(s) 26, 401
HpyAV CCTTC 2 cut(s) 23, 113
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 3 cut(s) 163, 389, 397
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 193, 235
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 288
MalI GATC 3 cut(s) 165, 391, 399
MbiI CCGCTC 1 cut(s) 159
MboI GATC 3 cut(s) 163, 389, 397
MboII GAAGA 3 cut(s) 16, 272, 318
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 45, 328, 435
MseI TTAA 1 cut(s) 138
MspI CCGG 2 cut(s) 208, 394
MspR9I CCNGG 4 cut(s) 366, 387, 394, 395
MvaI CCWGG 2 cut(s) 366, 387
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 394, 395
NdeII GATC 3 cut(s) 163, 389, 397
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 212, 384, 391
NmeAIII GCCGAG 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 365
PfoI TCCNGGA 2 cut(s) 364, 385
PkrI GCNGC 3 cut(s) 161, 181, 206
Ple19I CGATCG 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 364, 385
PspGI CCWGG 2 cut(s) 364, 385
PspN4I GGNNCC 3 cut(s) 212, 384, 391
PspPI GGNCC 3 cut(s) 122, 210, 337
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 389
PvuI CGATCG 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 160, 180, 205
Sau3AI GATC 3 cut(s) 163, 389, 397
Sau96I GGNCC 3 cut(s) 122, 210, 337
ScrFI CCNGG 4 cut(s) 366, 387, 394, 395
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 124, 132, 189, 232, 258, 339, 451
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 3 cut(s) 122, 210, 337
SmaI CCCGGG 1 cut(s) 395
Sse9I AATT 1 cut(s) 376
SsiI CCGC 3 cut(s) 159, 180, 204
SspI AATATT 1 cut(s) 87
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 4 cut(s) 364, 385, 392, 393
StyI CCWWGG 2 cut(s) 174, 183
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 100
TasI AATT 1 cut(s) 376
TauI GCSGC 3 cut(s) 162, 182, 207
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 17, 132
TspMI CCCGGG 1 cut(s) 393
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 3 cut(s) 122, 210, 337
XapI RAATTY 1 cut(s) 376
XmaI CCCGGG 1 cut(s) 393
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.