Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000028.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

135735 .. 138459

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000028.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgagggaaatcaaggtccagatgctcatcctcaacatctctgtcggcgaaagcggcgatcgtctcaccaaggccgccaaggtcttggagcaactcagcttgaagactagccctactatcgaagacatcaagaacatccttggtgccgggctcaagccccaccgggatttatgggcaggaaaaaaaaaaaaggttattgttgttgataactacttcactggctccaaggacaatcttaaaaaatggattggtcatcccagatttgagcttattcgtcatgatgtcactgaaacattgttggttgaggttgatcggatataccatcttgcatgcccagcttctccaattttctacaaatataatcctgtaaagagggtgttgcagagacagacaagcccaaaagtaggtgggaaactcatgcaactactattcgaccatggcacttcaaaaggtatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.85

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	54, 75
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	103, 447
AluBI	AGCT	3 cut(s)	99, 268, 338
AluI	AGCT	3 cut(s)	99, 268, 338
Alw26I	GTCTC	2 cut(s)	68, 379
AoxI	GGCC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	148, 164
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	110, 129
BccI	CCATC	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	148, 164
BcoDI	GTCTC	2 cut(s)	68, 379
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	55, 75
BlsI	GCNGC	2 cut(s)	56, 76
Bme1390I	CCNGG	2 cut(s)	148, 164
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	145, 223
BmrFI	CCNGG	2 cut(s)	148, 164
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	2 cut(s)	110, 129
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	2 cut(s)	148, 164
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	5 cut(s)	69, 78, 139, 225, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	69, 78, 139, 225, 436
BseGI	GGATG	3 cut(s)	27, 135, 253
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	147, 163
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	68, 379
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	58, 310
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	145, 223
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	5 cut(s)	69, 78, 139, 225, 436
BssMI	GATC	2 cut(s)	58, 310
BssT1I	CCWWGG	5 cut(s)	69, 78, 139, 225, 436
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	3 cut(s)	27, 135, 253
BstKTI	GATC	2 cut(s)	61, 313
BstMAI	GTCTC	2 cut(s)	68, 379
BstMBI	GATC	2 cut(s)	58, 310
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 335
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	146, 162
BstV2I	GAAGAC	2 cut(s)	110, 129
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	27, 135, 253
BtsIMutI	CAGTG	2 cut(s)	216, 285
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	4 cut(s)	278, 330, 418, 437
CviJI	RGCY	9 cut(s)	74, 99, 111, 151, 157, 222, 268, 338, 396
CviKI_1	RGCY	9 cut(s)	74, 99, 111, 151, 157, 222, 268, 338, 396
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	60, 312
DpnII	GATC	2 cut(s)	58, 310
Eco130I	CCWWGG	5 cut(s)	69, 78, 139, 225, 436
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	16
EcoT14I	CCWWGG	5 cut(s)	69, 78, 139, 225, 436
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	5 cut(s)	69, 78, 139, 225, 436
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	281, 333, 421, 440
FaiI	YATR	7 cut(s)	172, 279, 319, 331, 360, 419, 438
FatI	CATG	4 cut(s)	277, 329, 417, 436
Fnu4HI	GCNGC	2 cut(s)	55, 75
FokI	GGATG	3 cut(s)	14, 122, 240
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	55, 75
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	2 cut(s)	55, 75
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	147, 163
Hin1II	CATG	4 cut(s)	281, 333, 421, 440
HpaII	CCGG	2 cut(s)	147, 163
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	19, 130, 278
HpyCH4V	TGCA	3 cut(s)	329, 382, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 335
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	281, 333, 421, 440
Kzo9I	GATC	2 cut(s)	58, 310
LmnI	GCTCC	2 cut(s)	88, 227
LpnPI	CCDG	8 cut(s)	32, 160, 162, 176, 204, 271, 348, 378
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	60, 312
MboI	GATC	2 cut(s)	58, 310
MboII	GAAGA	2 cut(s)	115, 134
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	345
MnlI	CCTC	3 cut(s)	41, 298, 366
MseI	TTAA	2 cut(s)	237, 457
MspI	CCGG	2 cut(s)	147, 163
MspR9I	CCNGG	2 cut(s)	148, 164
MwoI	GCNNNNNNNGC	2 cut(s)	54, 335
NciI	CCSGG	2 cut(s)	148, 164
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	2 cut(s)	58, 310
NlaIII	CATG	4 cut(s)	281, 333, 421, 440
NlaIV	GGNNCC	2 cut(s)	145, 223
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	333
PagI	TCATGA	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	56, 76
Ple19I	CGATCG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	145, 223
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	237, 457
SatI	GCNGC	2 cut(s)	55, 75
Sau3AI	GATC	2 cut(s)	58, 310
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	148, 164
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	9 cut(s)	18, 84, 101, 195, 270, 309, 340, 409, 454
SfaNI	GCATC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	146, 162
StyI	CCWWGG	5 cut(s)	69, 78, 139, 225, 436
TaqI	TCGA	2 cut(s)	120, 432
TasI	AATT	1 cut(s)	345
TauI	GCSGC	2 cut(s)	57, 77
Tru1I	TTAA	2 cut(s)	237, 457
Tru9I	TTAA	2 cut(s)	237, 457
TscAI	CASTG	2 cut(s)	223, 292
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspRI	CASTG	2 cut(s)	223, 292
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	333
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.