Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014649.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 388

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

gcgtcggagaaccccatgagggaaatcaaggtccagatgctcatcctcaacatctctgtcggcgaaagcggcgatcgtctcaccaaggccgccaaggtcttggagcaactcagcttgaagactagccctactatcgaagacatcaagaacatccttggtgccggtatgtttttgctttctatgatcatttgcttattgtttgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0015935 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

68

Amino Acids

7.4

Weight (kDa)

6.4

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	2 cut(s)	69, 90
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	125, 144
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	70, 90
BlsI	GCNGC	2 cut(s)	71, 91
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	125, 144
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	84, 93, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	84, 93, 154
BseGI	GGATG	2 cut(s)	42, 150
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	73, 183
BspACI	CCGC	2 cut(s)	69, 90
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	84, 93, 154
BssMI	GATC	2 cut(s)	73, 183
BssT1I	CCWWGG	3 cut(s)	84, 93, 154
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	42, 150
BstKTI	GATC	2 cut(s)	76, 186
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	73, 183
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	125, 144
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	42, 150
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	31
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	3 cut(s)	89, 114, 126
CviKI_1	RGCY	3 cut(s)	89, 114, 126
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	75, 185
DpnII	GATC	2 cut(s)	73, 183
Eco130I	CCWWGG	3 cut(s)	84, 93, 154
Eco47I	GGWCC	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	84, 93, 154
ErhI	CCWWGG	3 cut(s)	84, 93, 154
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	19
FaiI	YATR	3 cut(s)	17, 167, 182
FatI	CATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	70, 90
FokI	GGATG	2 cut(s)	29, 137
Fsp4HI	GCNGC	2 cut(s)	70, 90
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	70, 90
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	19
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	34, 145
Hpy99I	CGWCG	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	73, 183
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	47, 175
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	123
MalI	GATC	2 cut(s)	75, 185
MboI	GATC	2 cut(s)	73, 183
MboII	GAAGA	2 cut(s)	130, 149
MnlI	CCTC	2 cut(s)	12, 56
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	73, 183
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	71, 91
Ple19I	CGATCG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	76
SatI	GCNGC	2 cut(s)	70, 90
Sau3AI	GATC	2 cut(s)	73, 183
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	3 cut(s)	33, 99, 116
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	2 cut(s)	69, 90
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	3 cut(s)	84, 93, 154
TaqI	TCGA	1 cut(s)	135
TauI	GCSGC	2 cut(s)	72, 92
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.