Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

18683452 .. 18685262

Gene Structure 1811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATTCGGATTAGCATTGTATGTTGCTGGACTGTTTGCCCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCACCAATCACTACATTACCAATTCTGTTAAAGGGTGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCGGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGTGGGCGGTAAAGGATTGGAAATGGTATACCCAACAACAACTTGACGAGGGACCGAACCCAATCTGGATCAATTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0008891 GO:0009853 GO:0009987 GO:0010109 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0019048 GO:0019222 GO:0031323 GO:0035821 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051701 GO:0051704 GO:0051817 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

102

Amino Acids

11.39

Weight (kDa)

4.65

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	27 - 77	3.4e-19	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	3 cut(s)	41, 155, 233
AclWI	GGATC	1 cut(s)	302
AluBI	AGCT	4 cut(s)	52, 146, 152, 182
AluI	AGCT	4 cut(s)	52, 146, 152, 182
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	139
BciVI	GTATCC	2 cut(s)	118, 178
BfaI	CTAG	1 cut(s)	191
BfuI	GTATCC	2 cut(s)	118, 178
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	120
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	62, 111
BseXI	GCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	185, 291
BsmFI	GGGAC	2 cut(s)	185, 291
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	3 cut(s)	41, 155, 233
BspCNI	CTCAG	2 cut(s)	61, 112
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	43
BssMI	GATC	1 cut(s)	294
BssNAI	GTATAC	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	48, 120
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 152
BstV1I	GCAGC	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	255
BsuI	GTATCC	2 cut(s)	118, 178
BtsCI	GGATG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	52, 71, 146, 152, 182, 218
CviKI_1	RGCY	6 cut(s)	52, 71, 146, 152, 182, 218
DdeI	CTNAG	2 cut(s)	48, 120
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	1 cut(s)	179
FaiI	YATR	7 cut(s)	22, 136, 140, 177, 198, 215, 255
FaqI	GGGAC	2 cut(s)	185, 291
FatI	CATG	1 cut(s)	175
FauI	CCCGC	2 cut(s)	48, 148
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	168
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	138, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 152
HpyF3I	CTNAG	2 cut(s)	48, 120
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	149, 179
LpnPI	CCDG	5 cut(s)	13, 38, 132, 216, 277
Lsp1109I	GCAGC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	4 cut(s)	93, 111, 162, 298
MnlI	CCTC	2 cut(s)	115, 268
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	49, 152
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	5 cut(s)	54, 134, 148, 154, 184
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	4 cut(s)	93, 111, 162, 298
SsiI	CCGC	3 cut(s)	41, 155, 233
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	34
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	93, 111, 162, 298
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TseI	GCWGC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.