Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

81848853 .. 81852319

Gene Structure 3467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTTGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTTTTGGAGCAACTCAGTGGCCAGACCCTTGTTTTCTCCAAAGCTCGGTACACTGTGAGGTCTTTCGGTATTCAAGAGCCTATCGATCTTGGAATTAAACACTGTCCACTGGCTAATTCCAACATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAGAGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGCACAGGGACGCTGATAACAAGAACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTCGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTACTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGATCCTGTACCAATTAACCGTTTCAGACCCAAGTACTTTTCTTCTTATATAGCATCTCCTTATATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

269

Amino Acids

30.02

Weight (kDa)

9.25

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 51	4.6e-17	Ribosomal protein L5
FMN_dh	PF01070	64 - 171	4.1e-21	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	54, 495
AciI	CCGC	3 cut(s)	54, 75, 493
AclWI	GGATC	3 cut(s)	435, 731, 744
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	570, 752
AfaI	GTAC	3 cut(s)	131, 744, 770
AfiI	CCNNNNNNNGG	2 cut(s)	126, 350
AgsI	TTSAA	4 cut(s)	155, 209, 262, 409
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	25, 125, 299, 504, 542
AluI	AGCT	5 cut(s)	25, 125, 299, 504, 542
Alw26I	GTCTC	4 cut(s)	68, 440, 624, 702
AlwI	GGATC	3 cut(s)	435, 731, 744
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	72, 100
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	16, 227
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	417
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	16, 227
BaeGI	GKGCMC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	736
BbvI	GCAGC	1 cut(s)	511
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	706
BcoDI	GTCTC	4 cut(s)	68, 440, 624, 702
BfaI	CTAG	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	3 cut(s)	55, 75, 525
BlsI	GCNGC	3 cut(s)	56, 76, 526
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	16, 227
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	16, 227
BmiI	GGNNCC	2 cut(s)	636, 738
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	6 cut(s)	476, 535, 557, 713, 736, 797
Bpu14I	TTCGAA	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	466
BsaI	GGTCTC	2 cut(s)	440, 624
BsaJI	CCNNGG	3 cut(s)	69, 78, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 350
Bse1I	ACTGG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	69, 78, 344
BseJI	GATNNNNATC	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	126, 350
BseMII	CTCAG	4 cut(s)	109, 291, 514, 713
BseNI	ACTGG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	511
BseYI	CCCAGC	1 cut(s)	647
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 102
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	126, 350
BsmAI	GTCTC	4 cut(s)	68, 440, 624, 702
BsmBI	CGTCTC	2 cut(s)	68, 702
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	74, 102
Bso31I	GGTCTC	2 cut(s)	440, 624
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	58, 166, 427, 736
BspACI	CCGC	3 cut(s)	54, 75, 493
BspANI	GGCC	2 cut(s)	74, 102
BspCNI	CTCAG	4 cut(s)	108, 292, 513, 712
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	636, 738
BspPI	GGATC	3 cut(s)	435, 731, 744
BspQI	GCTCTTC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	417
BspTNI	GGTCTC	2 cut(s)	440, 624
BsrBI	CCGCTC	2 cut(s)	54, 495
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	69, 78, 344
BssMI	GATC	4 cut(s)	58, 166, 427, 736
BssT1I	CCWWGG	3 cut(s)	69, 78, 344
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	136, 185, 609, 755
Bst6I	CTCTTC	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	5 cut(s)	95, 300, 500, 529, 699
BstKTI	GATC	4 cut(s)	61, 169, 430, 739
BstMAI	GTCTC	4 cut(s)	68, 440, 624, 702
BstMBI	GATC	4 cut(s)	58, 166, 427, 736
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 305, 501, 701
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	427, 736
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	2 cut(s)	427, 736
Bsu15I	ATCGAT	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	74, 102
BsuTUI	ATCGAT	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	5 cut(s)	103, 132, 181, 188, 330
Cac8I	GCNNGC	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	16, 227
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	2 cut(s)	371, 684
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	130, 743, 769
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	3 cut(s)	130, 743, 769
DdeI	CTNAG	5 cut(s)	95, 300, 500, 529, 699
DpnI	GATC	4 cut(s)	60, 168, 429, 738
DpnII	GATC	4 cut(s)	58, 166, 427, 736
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco130I	CCWWGG	3 cut(s)	69, 78, 344
Eco31I	GGTCTC	2 cut(s)	440, 624
Eco47I	GGWCC	2 cut(s)	16, 227
Eco57I	CTGAAG	2 cut(s)	570, 752
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	3 cut(s)	69, 78, 344
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	3 cut(s)	69, 78, 344
Esp3I	CGTCTC	2 cut(s)	68, 702
FaeI	CATG	1 cut(s)	667
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	663
FauI	CCCGC	1 cut(s)	500
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	55, 75, 525
Fsp4HI	GCNGC	3 cut(s)	55, 75, 525
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	3 cut(s)	55, 75, 525
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	74, 102
HgaI	GACGC	2 cut(s)	371, 684
Hin1II	CATG	1 cut(s)	667
HinfI	GANTC	2 cut(s)	271, 455
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	132, 188, 384
Hpy188I	TCNGA	6 cut(s)	293, 565, 589, 673, 732, 761
Hpy188III	TCNNGA	3 cut(s)	19, 155, 459
Hpy8I	GTNNAC	3 cut(s)	132, 188, 384
HpyAV	CCTTC	2 cut(s)	502, 727
HpyCH4III	ACNGT	4 cut(s)	136, 185, 609, 755
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 305, 501, 701
HpyF3I	CTNAG	5 cut(s)	95, 300, 500, 529, 699
Hsp92II	CATG	1 cut(s)	667
Kzo9I	GATC	4 cut(s)	58, 166, 427, 736
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	88, 539
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	6 cut(s)	476, 535, 557, 713, 736, 797
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	277, 311
MalI	GATC	4 cut(s)	60, 168, 429, 738
MbiI	CCGCTC	2 cut(s)	54, 495
MboI	GATC	4 cut(s)	58, 166, 427, 736
MboII	GAAGA	3 cut(s)	221, 306, 768
MflI	RGATCY	2 cut(s)	427, 736
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	174, 196, 421, 747
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	3 cut(s)	225, 271, 696
MnlI	CCTC	6 cut(s)	41, 132, 229, 297, 338, 529
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	177, 750, 805
MslI	CAYNNNNRTG	1 cut(s)	553
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	54, 305, 501, 701
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	58, 166, 427, 736
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	2 cut(s)	636, 738
NsiI	ATGCAT	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	271, 455
PkrI	GCNGC	3 cut(s)	56, 76, 526
Ple19I	CGATCG	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	636, 738
PspPI	GGNCC	2 cut(s)	16, 227
PspPPI	RGGWCCY	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	427, 736
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	504
RsaI	GTAC	3 cut(s)	131, 744, 770
RsaNI	GTAC	3 cut(s)	130, 743, 769
RseI	CAYNNNNRTG	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	177, 750, 805
SatI	GCNGC	3 cut(s)	55, 75, 525
Sau3AI	GATC	4 cut(s)	58, 166, 427, 736
Sau96I	GGNCC	2 cut(s)	16, 227
ScaI	AGTACT	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	357
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	6 cut(s)	476, 535, 557, 713, 736, 797
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	2 cut(s)	16, 227
SmiMI	CAYNNNNRTG	1 cut(s)	553
Sse9I	AATT	4 cut(s)	174, 196, 421, 747
SsiI	CCGC	3 cut(s)	54, 75, 493
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	3 cut(s)	69, 78, 344
TaaI	ACNGT	4 cut(s)	136, 185, 609, 755
TaqI	TCGA	2 cut(s)	165, 417
TasI	AATT	4 cut(s)	174, 196, 421, 747
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	2 cut(s)	271, 455
Tru1I	TTAA	3 cut(s)	177, 750, 805
Tru9I	TTAA	3 cut(s)	177, 750, 805
TscAI	CASTG	5 cut(s)	103, 139, 188, 195, 337
TseI	GCWGC	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	5 cut(s)	103, 139, 188, 195, 337
VpaK11BI	GGWCC	2 cut(s)	16, 227
XapI	RAATTY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	770
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.