Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

46387921 .. 46390394

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTTCGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTTGGAGCAACTCAGTGGCCAGATCCCTATTTTCTCCAAAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTCTATGGATCTGTCATTCGCTTGTCAGTATTAAAAGCATCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGGTTCAATATGGGAATGGTCTAGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAATCGTCCTTTTGGTCTCATAAACTTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAAACCCAAGTACTTTTCTTCTTATATAGCATCTCCTTATATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

7.85

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 29	4.2e-06	Ribosomal protein L5
MOSC_N	PF03476	67 - 117	8.3e-06	MOSC N-terminal beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	2 cut(s)	54, 75
AclWI	GGATC	2 cut(s)	101, 187
AcoI	YGGCCR	1 cut(s)	101
AcuI	CTGAAG	3 cut(s)	248, 363, 545
AfaI	GTAC	3 cut(s)	225, 537, 563
AgsI	TTSAA	3 cut(s)	131, 273, 553
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	25, 311, 377
AluI	AGCT	3 cut(s)	25, 311, 377
Alw26I	GTCTC	3 cut(s)	68, 417, 495
AlwI	GGATC	2 cut(s)	101, 187
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	72, 101
ApeKI	GCWGC	2 cut(s)	293, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspS9I	GGNCC	3 cut(s)	16, 149, 529
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	3 cut(s)	16, 149, 529
BalI	TGGCCA	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	280, 386
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	68, 417, 495
BfaI	CTAG	3 cut(s)	288, 351, 387
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	4 cut(s)	55, 75, 294, 375
BlsI	GCNGC	4 cut(s)	56, 76, 295, 376
BmcAI	AGTACT	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	3 cut(s)	16, 149, 529
BmgT120I	GGNCC	3 cut(s)	16, 149, 529
BmiI	GGNNCC	2 cut(s)	429, 531
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	6 cut(s)	218, 304, 326, 506, 529, 590
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	69, 78
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	69, 78
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	110, 506
BseXI	GCAGC	2 cut(s)	280, 386
BseYI	CCCAGC	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 103
BsiEI	CGRYCG	1 cut(s)	61
BsmAI	GTCTC	3 cut(s)	68, 417, 495
BsmBI	CGTCTC	2 cut(s)	68, 495
BsnI	GGCC	2 cut(s)	74, 103
Bso31I	GGTCTC	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	58, 106, 179
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	2 cut(s)	74, 103
BspCNI	CTCAG	2 cut(s)	109, 505
BspLI	GGNNCC	2 cut(s)	429, 531
BspPI	GGATC	2 cut(s)	101, 187
BspTNI	GGTCTC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	69, 78
BssMI	GATC	3 cut(s)	58, 106, 179
BssT1I	CCWWGG	2 cut(s)	69, 78
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	96, 298, 492
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	61, 109, 182
BstMAI	GTCTC	3 cut(s)	68, 417, 495
BstMBI	GATC	3 cut(s)	58, 106, 179
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 494
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	280, 386
BstX2I	RGATCY	2 cut(s)	106, 179
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	2 cut(s)	106, 179
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	74, 103
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	16, 149, 529
CseI	GACGC	1 cut(s)	477
CsiI	ACCWGGT	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	224, 536, 562
CviAII	CATG	2 cut(s)	217, 457
CviJI	RGCY	5 cut(s)	25, 74, 103, 311, 377
CviKI_1	RGCY	5 cut(s)	25, 74, 103, 311, 377
CviQI	GTAC	3 cut(s)	224, 536, 562
DdeI	CTNAG	3 cut(s)	96, 298, 492
DpnI	GATC	3 cut(s)	60, 108, 181
DpnII	GATC	3 cut(s)	58, 106, 179
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	69, 78
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	16, 149, 529
Eco57I	CTGAAG	3 cut(s)	248, 363, 545
EcoO109I	RGGNCCY	2 cut(s)	149, 529
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	69, 78
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	2 cut(s)	69, 78
Esp3I	CGTCTC	2 cut(s)	68, 495
FaeI	CATG	2 cut(s)	220, 460
FatI	CATG	2 cut(s)	216, 456
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	55, 75, 294, 375
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	55, 75, 294, 375
FspBI	CTAG	3 cut(s)	288, 351, 387
GluI	GCNGC	4 cut(s)	55, 75, 294, 375
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	74, 103
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	220, 460
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	245, 356
Hpy188I	TCNGA	4 cut(s)	334, 382, 466, 525
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	245, 356
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	317, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 494
HpyF3I	CTNAG	3 cut(s)	96, 298, 492
Hsp92II	CATG	2 cut(s)	220, 460
Kzo9I	GATC	3 cut(s)	58, 106, 179
LmnI	GCTCC	2 cut(s)	89, 308
Lsp1109I	GCAGC	2 cut(s)	280, 386
LweI	GCATC	6 cut(s)	218, 304, 326, 506, 529, 590
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	3 cut(s)	288, 351, 387
MalI	GATC	3 cut(s)	60, 108, 181
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	58, 106, 179
MboII	GAAGA	4 cut(s)	31, 143, 241, 561
MflI	RGATCY	2 cut(s)	106, 179
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	1 cut(s)	540
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	2 cut(s)	193, 489
MnlI	CCTC	4 cut(s)	41, 151, 260, 298
Mox20I	TGGCCA	1 cut(s)	103
Mph1103I	ATGCAT	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	4 cut(s)	203, 369, 543, 598
MslI	CAYNNNNRTG	1 cut(s)	322
Msp20I	TGGCCA	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	54, 494
NdeII	GATC	3 cut(s)	58, 106, 179
NlaIII	CATG	2 cut(s)	220, 460
NlaIV	GGNNCC	2 cut(s)	429, 531
NsiI	ATGCAT	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	56, 76, 295, 376
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PpuMI	RGGWCCY	2 cut(s)	149, 529
Psp5II	RGGWCCY	2 cut(s)	149, 529
Psp6I	CCWGG	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	429, 531
PspPI	GGNCC	3 cut(s)	16, 149, 529
PspPPI	RGGWCCY	2 cut(s)	149, 529
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	106, 179
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	3 cut(s)	225, 537, 563
RsaNI	GTAC	3 cut(s)	224, 536, 562
RseI	CAYNNNNRTG	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	203, 369, 543, 598
SatI	GCNGC	4 cut(s)	55, 75, 294, 375
Sau3AI	GATC	3 cut(s)	58, 106, 179
Sau96I	GGNCC	3 cut(s)	16, 149, 529
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	153
SexAI	ACCWGGT	1 cut(s)	151
SfaNI	GCATC	6 cut(s)	218, 304, 326, 506, 529, 590
SinI	GGWCC	3 cut(s)	16, 149, 529
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	3 cut(s)	288, 351, 387
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	69, 78
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	540
TatI	WGTACW	2 cut(s)	223, 561
TauI	GCSGC	2 cut(s)	57, 77
Tru1I	TTAA	4 cut(s)	203, 369, 543, 598
Tru9I	TTAA	4 cut(s)	203, 369, 543, 598
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	2 cut(s)	293, 374
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	3 cut(s)	16, 149, 529
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	3 cut(s)	288, 351, 387
ZrmI	AGTACT	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.