Rh4AG121500

peroxisomal (S)-2-hydroxy-acid oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000887
Physical Location & Seq
Forward (+)
26261955 .. 26267894
5940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG121500.1

Sequence Viewer

Length: 591 bp
ATGATATGGGTGGGCCTCCCGGCGCTGTTGGGTCTGAAGAAAGCTCCTCCGGTGGGTCCTGGTTGGGAGGGTGGGTTGGGAAAGGCAAAGAGCCTGAGAATTTGGGGGACGGTGAGCTTCGTCTCAGACAGAAGATGGAAGCCTTCGCCCTCTTCCTCTTCCCGCTCAACCCTTCATTCAGATCCAGTCCCTGGAAGAATTGTCTCCCACCGCTCCAGCCTCTGGTTTTGGGGTTTTTTTGGTTTGGATGACTTGGGTTTTTTCATAGTATTGCATTGGAGGAGGAATAAGGTTGTTTTAGAGTTGATGATGCGTGTGTGCTCGAGTGCATGTCATGGACCCATCACCATTTCTCACTTGCTCAAAACTTCAAAAGGACACTGTCCGCTATGGCTAATTCTAGCATTGACGAAGTTGCCTCAACTGGACCTGGTATTCGCTTGTTCCACCTCTATGTTTACTATGTCACCAACTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATAATTCTGGATTAGCATCATATGTTGCTGGACTATTTGACTGCTCTTTTAGTGGGAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146
Pfam Domains
Protein Families
FMN_dh

Protein Analysis

196

Amino Acids

21.62

Weight (kDa)

9.51

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 191, 222
AccBSI CCGCTC 2 cut(s) 165, 213
AciI CCGC 3 cut(s) 163, 211, 386
AclWI GGATC 2 cut(s) 176, 510
AcsI RAATTY 2 cut(s) 99, 496
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 53, 191, 222
AgsI TTSAA 3 cut(s) 372, 484, 494
AjnI CCWGG 3 cut(s) 58, 190, 429
AluBI AGCT 2 cut(s) 44, 117
AluI AGCT 2 cut(s) 44, 117
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 3 cut(s) 127, 208, 515
AlwI GGATC 2 cut(s) 176, 510
AlwNI CAGNNNCTG 2 cut(s) 191, 222
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 99, 496
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 13, 56, 338, 427
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 124, 337, 459
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 3 cut(s) 56, 338, 427
Bbv12I GWGCWC 1 cut(s) 323
BccI CCATC 2 cut(s) 129, 350
BciT130I CCWGG 3 cut(s) 60, 192, 431
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 127, 208, 515
BfaI CTAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 26
Bme1390I CCNGG 4 cut(s) 20, 60, 192, 431
Bme18I GGWCC 3 cut(s) 56, 338, 427
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 4 cut(s) 13, 56, 338, 427
BmiI GGNNCC 2 cut(s) 57, 340
BmrFI CCNGG 4 cut(s) 20, 60, 192, 431
BmsI GCATC 2 cut(s) 300, 551
BpmI CTGGAG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 541
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 191, 222
Bse1I ACTGG 2 cut(s) 185, 429
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 3 cut(s) 60, 192, 431
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 3 cut(s) 53, 191, 222
BseMII CTCAG 2 cut(s) 86, 138
BseNI ACTGG 2 cut(s) 185, 429
BseRI GAGGAG 2 cut(s) 36, 295
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 20, 50
BslFI GGGAC 2 cut(s) 121, 173
BslI CCNNNNNNNGG 3 cut(s) 53, 191, 222
BsmAI GTCTC 3 cut(s) 127, 208, 515
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 121, 173
BsnI GGCC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 181, 502
BspACI CCGC 3 cut(s) 163, 211, 386
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 87, 137
BspLI GGNNCC 2 cut(s) 57, 340
BspPI GGATC 2 cut(s) 176, 510
BspTNI GGTCTC 1 cut(s) 515
BsrBI CCGCTC 2 cut(s) 165, 213
BsrI ACTGG 2 cut(s) 185, 429
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 181, 502
Bst2UI CCWGG 3 cut(s) 60, 192, 431
Bst4CI ACNGT 2 cut(s) 112, 383
Bst6I CTCTTC 2 cut(s) 157, 163
BstDEI CTNAG 2 cut(s) 95, 124
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 184, 505
BstMAI GTCTC 3 cut(s) 127, 208, 515
BstMBI GATC 2 cut(s) 181, 502
BstNI CCWGG 3 cut(s) 60, 192, 431
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 4 cut(s) 18, 58, 190, 429
BstX2I RGATCY 2 cut(s) 181, 502
BstYI RGATCY 2 cut(s) 181, 502
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 379
CaiI CAGNNNCTG 2 cut(s) 191, 222
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 4 cut(s) 13, 56, 338, 427
CsiI ACCWGGT 1 cut(s) 429
CviAII CATG 2 cut(s) 330, 335
CviJI RGCY 7 cut(s) 15, 44, 93, 117, 142, 219, 394
CviKI_1 RGCY 7 cut(s) 15, 44, 93, 117, 142, 219, 394
DdeI CTNAG 2 cut(s) 95, 124
DpnI GATC 2 cut(s) 183, 504
DpnII GATC 2 cut(s) 181, 502
Eam1104I CTCTTC 2 cut(s) 157, 163
EarI CTCTTC 2 cut(s) 157, 163
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 3 cut(s) 56, 338, 427
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 3 cut(s) 58, 190, 429
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 333, 338
FaiI YATR 9 cut(s) 7, 266, 331, 336, 391, 455, 464, 547, 549
FaqI GGGAC 2 cut(s) 121, 173
FatI CATG 2 cut(s) 329, 334
FauI CCCGC 1 cut(s) 170
FauNDI CATATG 1 cut(s) 547
FokI GGATG 1 cut(s) 260
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 15
HapII CCGG 2 cut(s) 20, 50
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 333, 338
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HpaII CCGG 2 cut(s) 20, 50
HphI GGTGA 3 cut(s) 124, 337, 459
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 3 cut(s) 36, 127, 181
Hpy188III TCNNGA 1 cut(s) 534
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 3 cut(s) 153, 182, 577
HpyCH4III ACNGT 2 cut(s) 112, 383
HpyCH4V TGCA 2 cut(s) 274, 329
HpyF3I CTNAG 2 cut(s) 95, 124
Hsp92II CATG 2 cut(s) 333, 338
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 181, 502
LmnI GCTCC 2 cut(s) 49, 218
LweI GCATC 2 cut(s) 300, 551
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 465
MalI GATC 2 cut(s) 183, 504
MbiI CCGCTC 2 cut(s) 165, 213
MboI GATC 2 cut(s) 181, 502
MboII GAAGA 5 cut(s) 49, 144, 144, 150, 207
MflI RGATCY 2 cut(s) 181, 502
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 5 cut(s) 99, 198, 396, 496, 529
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 2 cut(s) 20, 50
MspR9I CCNGG 4 cut(s) 20, 60, 192, 431
MvaI CCWGG 3 cut(s) 60, 192, 431
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 181, 502
NlaIII CATG 2 cut(s) 333, 338
NlaIV GGNNCC 2 cut(s) 57, 340
NmuCI GTSAC 1 cut(s) 465
NspI RCATGY 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 381
PflMI CCANNNNNTGG 2 cut(s) 191, 222
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 3 cut(s) 58, 190, 429
PspGI CCWGG 3 cut(s) 58, 190, 429
PspN4I GGNNCC 2 cut(s) 57, 340
PspPI GGNCC 4 cut(s) 13, 56, 338, 427
PspPPI RGGWCCY 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 322
PstNI CAGNNNCTG 2 cut(s) 191, 222
PsuI RGATCY 2 cut(s) 181, 502
PsyI GACNNNGTC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 452
Sau3AI GATC 2 cut(s) 181, 502
Sau96I GGNCC 4 cut(s) 13, 56, 338, 427
ScrFI CCNGG 4 cut(s) 20, 60, 192, 431
SduI GDGCHC 1 cut(s) 323
SetI ASST 5 cut(s) 46, 119, 294, 432, 452
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 2 cut(s) 300, 551
Sfr274I CTCGAG 1 cut(s) 322
SinI GGWCC 3 cut(s) 56, 338, 427
SlaI CTCGAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 5 cut(s) 99, 198, 396, 496, 529
SsiI CCGC 3 cut(s) 163, 211, 386
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 4 cut(s) 18, 58, 190, 429
TaaI ACNGT 2 cut(s) 112, 383
TaqI TCGA 1 cut(s) 323
TasI AATT 5 cut(s) 99, 198, 396, 496, 529
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 2 cut(s) 164, 253
TspRI CASTG 1 cut(s) 386
Tth111I GACNNNGTC 1 cut(s) 381
Van91I CCANNNNNTGG 2 cut(s) 191, 222
VpaK11BI GGWCC 3 cut(s) 56, 338, 427
XapI RAATTY 2 cut(s) 99, 496
XceI RCATGY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 322
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.