Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001757.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

27552 .. 29938

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001757.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgagggaaatcaaggtccagaagctcgtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaaggtctttggagcaactcagtggccagacccctctcagtacactgtgaggtctttcagtattcaggagcctatcgatcttggaattaacattgaagaagttgcctcaacaggacctggtattcgcttgttccaactctatgtgttcaaagacaggaatctggttacatggcttgtcagaagggctgagagggctggttacaaggcaatagtcctcactactaacattctaaggctcgggtgcagggacgctgatatcaagaacaggtttactatgccaccaagattgacattgaaaaacttcgaaaatttgggtcatagaaagattgatgaggttggacccatttacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

143

Amino Acids

16.32

Weight (kDa)

9.8

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	54, 75
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	173, 226, 373
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	72, 101
ApoI	RAATTY	1 cut(s)	385
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	16, 191, 416
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	16, 191, 416
BalI	TGGCCA	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	55, 75
BlsI	GCNGC	2 cut(s)	56, 76
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	3 cut(s)	16, 191, 416
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	3 cut(s)	16, 191, 416
BmiI	GGNNCC	2 cut(s)	147, 418
BmrFI	CCNGG	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	69, 78
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	69, 78
BseMII	CTCAG	3 cut(s)	110, 128, 255
BsgI	GTGCAG	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 103
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	74, 103
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	58, 154
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	2 cut(s)	74, 103
BspCNI	CTCAG	3 cut(s)	109, 127, 256
BspDI	ATCGAT	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	147, 418
BspT104I	TTCGAA	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	69, 78
BssMI	GATC	2 cut(s)	58, 154
BssT1I	CCWWGG	2 cut(s)	69, 78
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	96, 114, 264, 308
BstKTI	GATC	2 cut(s)	61, 157
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	58, 154
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 269
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	74, 103
BsuTUI	ATCGAT	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	104, 120
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	16, 191, 416
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	335
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	8 cut(s)	25, 74, 103, 148, 250, 263, 272, 313
CviKI_1	RGCY	8 cut(s)	25, 74, 103, 148, 250, 263, 272, 313
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	4 cut(s)	96, 114, 264, 308
DpnI	GATC	2 cut(s)	60, 156
DpnII	GATC	2 cut(s)	58, 154
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	69, 78
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	3 cut(s)	16, 191, 416
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	69, 78
ErhI	CCWWGG	2 cut(s)	69, 78
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	249
FaiI	YATR	4 cut(s)	219, 247, 353, 396
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	55, 75
Fsp4HI	GCNGC	2 cut(s)	55, 75
GluI	GCNGC	2 cut(s)	55, 75
HaeIII	GGCC	2 cut(s)	74, 103
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	249
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	120, 348
Hpy188I	TCNGA	2 cut(s)	257, 431
Hpy188III	TCNNGA	3 cut(s)	19, 143, 337
Hpy8I	GTNNAC	2 cut(s)	120, 348
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 269
HpyF3I	CTNAG	4 cut(s)	96, 114, 264, 308
Hsp92II	CATG	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	58, 154
LmnI	GCTCC	2 cut(s)	89, 145
MabI	ACCWGGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	241, 275
MalI	GATC	2 cut(s)	60, 156
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	58, 154
MboII	GAAGA	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	2 cut(s)	162, 385
MluNI	TGGCCA	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	235, 394
MnlI	CCTC	7 cut(s)	41, 120, 121, 193, 261, 302, 403
Mox20I	TGGCCA	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	54, 269
NdeII	GATC	2 cut(s)	58, 154
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	147, 418
NspV	TTCGAA	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	56, 76
Ple19I	CGATCG	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	147, 418
PspPI	GGNCC	3 cut(s)	16, 191, 416
PspPPI	RGGWCCY	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	55, 75
Sau3AI	GATC	2 cut(s)	58, 154
Sau96I	GGNCC	3 cut(s)	16, 191, 416
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	7 cut(s)	18, 27, 84, 131, 196, 347, 414
SexAI	ACCWGGT	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	3 cut(s)	16, 191, 416
Sse9I	AATT	2 cut(s)	162, 385
SsiI	CCGC	2 cut(s)	54, 75
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	69, 78
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	153, 381
TasI	AATT	2 cut(s)	162, 385
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	104, 127
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	104, 127
VpaK11BI	GGWCC	3 cut(s)	16, 191, 416
XapI	RAATTY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.