RchiOBHm_Chr5g0008621

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000887
Physical Location & Seq
Forward (+)
5569074 .. 5570028
955 bp
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UTR
Exon/CDS
Intron
PRQ28957

Sequence Viewer

Length: 453 bp
ATGGATGTACTGAGGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAATCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCGCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATAAGCATCTGAAGGACCCTGTATCAATTAACTGTTTCAGACCCAACATTCTTGTTAACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGTTGTGCTTCCGCTGTCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

5.11

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 78 - 149 6.5e-14 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 439
AcuI CTGAAG 2 cut(s) 147, 329
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 2 cut(s) 57, 419
AluBI AGCT 2 cut(s) 95, 161
AluI AGCT 2 cut(s) 95, 161
Alw26I GTCTC 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 77, 158, 423
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 64, 170, 410
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 3 cut(s) 78, 159, 424
BlsI GCNGC 3 cut(s) 79, 160, 425
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 315
BmsI GCATC 4 cut(s) 88, 110, 290, 313
BoxI GACNNNNGTC 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 64, 170, 410
BseYI CCCAGC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 279
BsmBI CGTCTC 1 cut(s) 279
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 213, 315
Bst4CI ACNGT 3 cut(s) 186, 332, 359
BstAPI GCANNNNNTGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 11, 82, 276
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 278, 432
BstNSI RCATGY 1 cut(s) 430
BstPAI GACNNNNGTC 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 64, 170, 410
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 241, 427
CviJI RGCY 2 cut(s) 95, 161
CviKI_1 RGCY 2 cut(s) 95, 161
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 3 cut(s) 11, 82, 276
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 147, 329
EcoO109I RGGNCCY 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 2 cut(s) 244, 430
FaiI YATR 9 cut(s) 23, 61, 201, 222, 242, 262, 385, 428, 451
FatI CATG 2 cut(s) 240, 426
Fnu4HI GCNGC 3 cut(s) 78, 159, 424
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 78, 159, 424
FspBI CTAG 1 cut(s) 171
GluI GCNGC 3 cut(s) 78, 159, 424
GsaI CCCAGC 1 cut(s) 228
HgaI GACGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 244, 430
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 1 cut(s) 25
HpaI GTTAAC 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 29, 355, 365
Hpy188I TCNGA 7 cut(s) 118, 166, 250, 309, 338, 376, 398
Hpy8I GTNNAC 3 cut(s) 29, 355, 365
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 3 cut(s) 186, 332, 359
HpyCH4V TGCA 3 cut(s) 101, 158, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 432
HpyF3I CTNAG 3 cut(s) 11, 82, 276
Hsp92II CATG 2 cut(s) 244, 430
KspAI GTTAAC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 57, 189, 210, 219, 228, 263, 330, 431
Lsp1109I GCAGC 3 cut(s) 64, 170, 410
LweI GCATC 4 cut(s) 88, 110, 290, 313
MaeI CTAG 1 cut(s) 171
MboII GAAGA 1 cut(s) 389
MluCI AATT 2 cut(s) 324, 406
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 6, 82
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 3 cut(s) 153, 327, 354
MslI CAYNNNNRTG 2 cut(s) 106, 418
MspA1I CMGCKG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 278, 432
NlaIII CATG 2 cut(s) 244, 430
NlaIV GGNNCC 2 cut(s) 213, 315
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 430
PkrI GCNGC 3 cut(s) 79, 160, 425
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 213, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 106, 418
SaqAI TTAA 3 cut(s) 153, 327, 354
SatI GCNGC 3 cut(s) 78, 159, 424
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 34
SetI ASST 8 cut(s) 97, 136, 163, 178, 208, 217, 255, 450
SfaNI GCATC 4 cut(s) 88, 110, 290, 313
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 106, 418
Sse9I AATT 2 cut(s) 324, 406
SsiI CCGC 1 cut(s) 439
SspMI CTAG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 186, 332, 359
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 324, 406
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 3 cut(s) 153, 327, 354
Tru9I TTAA 3 cut(s) 153, 327, 354
TseI GCWGC 3 cut(s) 77, 158, 423
VpaK11BI GGWCC 1 cut(s) 313
XceI RCATGY 1 cut(s) 430
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.