RchiOBHm_Chr2g0118971

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000887
Physical Location & Seq
Reverse (-)
31248409 .. 31249364
956 bp
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UTR
Exon/CDS
Intron
PRQ49172

Sequence Viewer

Length: 330 bp
ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTTTGGTGCTGCCTTAGATGAGGGAGTTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCACTTTAATGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAAATGTCAGAATAAACAATTTCACATTTCAATGTTGCATGCTGTGCTTCCGCTGTCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

4.67

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 52 - 108 5e-12 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 316
AcuI CTGAAG 2 cut(s) 32, 206
AfaI GTAC 2 cut(s) 9, 198
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 57, 296
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 160
BfaI CTAG 1 cut(s) 135
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 4 cut(s) 88, 110, 167, 190
BoxI GACNNNNGTC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 322
BseXI GCAGC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 322
BspACI CCGC 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 209, 236
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 307
BstPAI GACNNNNGTC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 64
BsuI GTATCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 8, 197
CviAII CATG 1 cut(s) 304
CviQI GTAC 2 cut(s) 8, 197
DdeI CTNAG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 32, 206
EcoO109I RGGNCCY 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 103, 160
FaeI CATG 1 cut(s) 307
FaiI YATR 5 cut(s) 23, 61, 262, 305, 328
FatI CATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 2 cut(s) 140, 232
HindII GTYRAC 2 cut(s) 140, 232
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 5 cut(s) 29, 140, 148, 232, 242
Hpy188I TCNGA 5 cut(s) 118, 186, 215, 253, 275
Hpy8I GTNNAC 5 cut(s) 29, 140, 148, 232, 242
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 209, 236
HpyCH4V TGCA 3 cut(s) 101, 158, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 1 cut(s) 307
LpnPI CCDG 2 cut(s) 207, 308
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 4 cut(s) 88, 110, 167, 190
MaeI CTAG 1 cut(s) 135
MboII GAAGA 2 cut(s) 25, 266
MluCI AATT 2 cut(s) 201, 283
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 82
Mph1103I ATGCAT 2 cut(s) 103, 160
MseI TTAA 2 cut(s) 153, 204
MslI CAYNNNNRTG 3 cut(s) 106, 153, 295
MspA1I CMGCKG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 309
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 192
NsiI ATGCAT 2 cut(s) 103, 160
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 9, 198
RsaNI GTAC 2 cut(s) 8, 197
RseI CAYNNNNRTG 3 cut(s) 106, 153, 295
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 204
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 34
SetI ASST 2 cut(s) 136, 327
SfaNI GCATC 4 cut(s) 88, 110, 167, 190
SgeI CNNG 7 cut(s) 47, 137, 147, 155, 206, 239, 316
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 3 cut(s) 106, 153, 295
SphI GCATGC 1 cut(s) 307
Sse9I AATT 2 cut(s) 201, 283
SsiI CCGC 1 cut(s) 316
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 209, 236
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 201, 283
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 2 cut(s) 153, 204
Tru9I TTAA 2 cut(s) 153, 204
TseI GCWGC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 2 cut(s) 103, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.