Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

7846028 .. 7848204

Gene Structure 2177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAATACTTTAGATCCTGAGCTATTCCGGATTCAAGGATCTCTGCTTCATCCCTTTGAATTAAGGCTTGGGCTGGAGAATGGTGTCTACACTCTACACGGTCAAACGCAGGCGTCGGAGAACCCCATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGAAGCAACTCAGCGTCCAGACACCTGTTTTCTCCAAAGGTGAGATTTTTAGGGTTTCTCTGTTCATTTTTGTTTTAGGGTTTATGTGTTGGTGGGTTGTGACTGTGGGTGTGCAGCTCGGTACACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

8.93

Isoelectric Point (pI)

11.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	41 - 79	8e-08	Ribosomal protein L5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	2 cut(s)	168, 189
AclWI	GGATC	2 cut(s)	8, 46
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	35, 59, 202
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	22, 151, 316
AluI	AGCT	3 cut(s)	22, 151, 316
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	8, 46
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	172, 251
AvaII	GGWCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	169, 189, 314
BlsI	GCNGC	3 cut(s)	170, 190, 315
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	157, 183, 192
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	157, 183, 192
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	9, 223
BseXI	GCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	13, 38, 172
BspACI	CCGC	2 cut(s)	168, 189
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	10, 222
BspEI	TCCGGA	1 cut(s)	27
BspPI	GGATC	2 cut(s)	8, 46
BsrBI	CCGCTC	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	157, 183, 192
BssMI	GATC	3 cut(s)	13, 38, 172
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	2 cut(s)	183, 192
Bst4CI	ACNGT	3 cut(s)	101, 304, 327
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	18, 209
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	16, 41, 175
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	13, 38, 172
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	13, 38
BstYI	RGATCY	2 cut(s)	13, 38
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	2 cut(s)	102, 202
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	6 cut(s)	22, 67, 73, 151, 188, 316
CviKI_1	RGCY	6 cut(s)	22, 67, 73, 151, 188, 316
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	18, 209
DpnI	GATC	3 cut(s)	15, 40, 174
DpnII	GATC	3 cut(s)	13, 38, 172
Eco130I	CCWWGG	2 cut(s)	183, 192
Eco47I	GGWCC	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	183, 192
ErhI	CCWWGG	2 cut(s)	183, 192
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	128, 284
FatI	CATG	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	169, 189, 314
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	3 cut(s)	169, 189, 314
GluI	GCNGC	3 cut(s)	169, 189, 314
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	2 cut(s)	102, 202
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	2 cut(s)	172, 251
Hpy166II	GTNNAC	2 cut(s)	88, 323
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	5 cut(s)	17, 28, 145, 199, 217
Hpy8I	GTNNAC	2 cut(s)	88, 323
Hpy99I	CGWCG	1 cut(s)	118
HpyCH4III	ACNGT	3 cut(s)	101, 304, 327
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	18, 209
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	13, 38, 172
LpnPI	CCDG	7 cut(s)	30, 41, 59, 95, 158, 230, 237
Lsp1109I	GCAGC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	15, 40, 174
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	13, 38, 172
MflI	RGATCY	2 cut(s)	13, 38
MluCI	AATT	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	123, 167
MroI	TCCGGA	1 cut(s)	27
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	3 cut(s)	13, 38, 172
NlaIII	CATG	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	170, 190, 315
Ple19I	CGATCG	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	142
PsuI	RGATCY	2 cut(s)	13, 38
PvuI	CGATCG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	3 cut(s)	169, 189, 314
Sau3AI	GATC	3 cut(s)	13, 38, 172
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	7 cut(s)	24, 144, 153, 198, 226, 241, 318
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	168, 189
StyI	CCWWGG	2 cut(s)	183, 192
TaaI	ACNGT	3 cut(s)	101, 304, 327
TasI	AATT	1 cut(s)	59
TauI	GCSGC	2 cut(s)	171, 191
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	17, 38, 253
VpaK11BI	GGWCC	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.