Rw2G035690

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001394
Physical Location & Seq
Reverse (-)
58735695 .. 58737285
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035690.1

Sequence Viewer

Length: 690 bp
ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTGAAGCTCCTGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGGTTAGTAGTAAACTACAAAGGGAAAGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAGCTGCCAAATGAGGCATTCCTAGAGAATTTGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGCACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGTTGATGCATCGAAATGGTTTTCAGATTATCTTCGGAGAACTCTTCTAGATTTCAGACACTCATGTTTTATGGAAGTACCTACAATCAATCAAGCTACAGGCATTGCAGGAATTGAGACAACCGACACTCTTAAGAAAATCCGGTCTGATGCAATTTTACGTCCAACAGGGGAAACAGCAGGGAAGGTGATTTTTCAGGTCTACTTTGGGCAGCATCTTGTTTGGAGGGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

229

Amino Acids

25.23

Weight (kDa)

6.18

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 9 - 134 4e-35 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 564
AclWI GGATC 1 cut(s) 123
AcsI RAATTY 2 cut(s) 69, 223
AcuI CTGAAG 2 cut(s) 102, 302
AfaI GTAC 2 cut(s) 195, 441
AfiI CCNNNNNNNGG 1 cut(s) 658
AflII CTTAAG 1 cut(s) 494
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 5 cut(s) 86, 178, 199, 243, 458
AluI AGCT 5 cut(s) 86, 178, 199, 243, 458
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 473, 667
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 199, 347, 574, 680
ApoI RAATTY 2 cut(s) 69, 223
AsuHPI GGTGA 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 186, 334, 586
BccI CCATC 3 cut(s) 265, 311, 652
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 473, 667
BfaI CTAG 3 cut(s) 218, 251, 410
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 494
BglII AGATCT 1 cut(s) 637
BisI GCNGC 4 cut(s) 200, 348, 575, 681
BlsI GCNGC 4 cut(s) 201, 349, 576, 682
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 5 cut(s) 41, 358, 380, 502, 586
BmuI ACTGGG 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 313, 638
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 64, 266
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse1I ACTGG 2 cut(s) 50, 106
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 64, 266
BseGI GGATG 2 cut(s) 276, 280
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 50, 106
BseXI GCAGC 3 cut(s) 186, 334, 586
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 2 cut(s) 473, 667
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 115, 637
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 50, 106
BssECI CCNNGG 2 cut(s) 64, 266
BssMI GATC 2 cut(s) 115, 637
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 411, 670
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 276, 280
BstKTI GATC 2 cut(s) 118, 640
BstMAI GTCTC 2 cut(s) 473, 667
BstMBI GATC 2 cut(s) 115, 637
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 186, 334, 586
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 2 cut(s) 276, 280
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 194, 440
CviAII CATG 2 cut(s) 60, 426
CviJI RGCY 6 cut(s) 86, 172, 178, 199, 243, 458
CviKI_1 RGCY 6 cut(s) 86, 172, 178, 199, 243, 458
CviQI GTAC 2 cut(s) 194, 440
DdeI CTNAG 1 cut(s) 352
DpnI GATC 2 cut(s) 117, 639
DpnII GATC 2 cut(s) 115, 637
Eam1104I CTCTTC 2 cut(s) 411, 670
EarI CTCTTC 2 cut(s) 411, 670
Eco31I GGTCTC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 102, 302
EcoRII CCWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 2 cut(s) 63, 429
FaiI YATR 9 cut(s) 44, 46, 61, 154, 156, 331, 427, 434, 648
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 605
FatI CATG 2 cut(s) 59, 425
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 200, 348, 575, 681
FokI GGATG 2 cut(s) 283, 287
Fsp4HI GCNGC 4 cut(s) 200, 348, 575, 681
FspBI CTAG 3 cut(s) 218, 251, 410
GluI GCNGC 4 cut(s) 200, 348, 575, 681
HapII CCGG 1 cut(s) 505
Hin1II CATG 2 cut(s) 63, 429
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 593
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 2 cut(s) 136, 565
Hpy188I TCNGA 6 cut(s) 19, 82, 388, 399, 419, 511
Hpy188III TCNNGA 3 cut(s) 410, 625, 655
Hpy8I GTNNAC 2 cut(s) 136, 565
HpyAV CCTTC 4 cut(s) 277, 541, 607, 622
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 32, 371, 470, 515, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 2 cut(s) 63, 429
Kzo9I GATC 2 cut(s) 115, 637
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 3 cut(s) 186, 334, 586
LweI GCATC 5 cut(s) 41, 358, 380, 502, 586
MaeI CTAG 3 cut(s) 218, 251, 410
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 117, 639
MboI GATC 2 cut(s) 115, 637
MboII GAAGA 4 cut(s) 31, 386, 398, 657
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 4 cut(s) 69, 223, 474, 516
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 551, 613
MnlI CCTC 6 cut(s) 184, 202, 352, 582, 599, 662
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 2 cut(s) 257, 495
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeII GATC 2 cut(s) 115, 637
NlaIII CATG 2 cut(s) 63, 429
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 201, 349, 576, 682
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 2 cut(s) 195, 441
RsaNI GTAC 2 cut(s) 194, 440
RseI CAYNNNNRTG 1 cut(s) 376
SaqAI TTAA 2 cut(s) 257, 495
SatI GCNGC 4 cut(s) 200, 348, 575, 681
Sau3AI GATC 2 cut(s) 115, 637
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 5 cut(s) 41, 358, 380, 502, 586
SfcI CTRYAG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 3 cut(s) 292, 494, 653
SmoI CTYRAG 3 cut(s) 292, 494, 653
Sse9I AATT 4 cut(s) 69, 223, 474, 516
SspMI CTAG 3 cut(s) 218, 251, 410
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 1 cut(s) 526
TaqI TCGA 2 cut(s) 118, 374
TasI AATT 4 cut(s) 69, 223, 474, 516
Tru1I TTAA 2 cut(s) 257, 495
Tru9I TTAA 2 cut(s) 257, 495
TseI GCWGC 4 cut(s) 199, 347, 574, 680
TspDTI ATGAA 2 cut(s) 31, 690
Vha464I CTTAAG 1 cut(s) 494
XapI RAATTY 2 cut(s) 69, 223
XbaI TCTAGA 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 3 cut(s) 218, 251, 410
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.