Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004847.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

51072 .. 53913

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004847.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggagaaggcagtttcagaagtcaaagttgcatcaatcttcatatacccagtaaaatcatgccgtggaatttcagtttctcaagctcatgttactcctactggttttcgttgggatcgacaatggttagtagtaaactacaaagggagggcatatactcaaagagttgagccaaagcttgctttggttgaggtacagctgccaaatgagtcattcctagagaactgggaacctactaaaagctcttatctagtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgctgccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcgacttgtccgctttaatgcagcttcagaaactaggcctgtagatactgaatatgctcctggacaccaaataatgttctccgatatgtatccatacatgctattgtctcagggatcactggatgcgctaaatgagcttctgaaggaacccataccagttaaccgatttagacccaacattcttgttaacggatgtgaaccattttccgaagacctatggacagatatcaggatagacaagctaacatttcaaggtgtcaagctatgctcccgctgtaaggtacctacaatcaatcaagctactggcattgctggaactgagccaaccaacactcttaagaaaatccggtctgatgcagttttacgtccaacaggaaaacagcagggaagggtctactttgggcagcatcttgtttggagagactctgttacaggaggtgtgaagggaaatgtcgtgaaggttggagatcttgtttatgtcctcaagatggtctcttctgctaatgaagcagcagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

308

Amino Acids

34.23

Weight (kDa)

8.54

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	2 cut(s)	409, 801
AciI	CCGC	2 cut(s)	418, 679
AclWI	GGATC	2 cut(s)	123, 529
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	3 cut(s)	302, 417, 569
AfaI	GTAC	3 cut(s)	195, 298, 690
AfiI	CCNNNNNNNGG	2 cut(s)	685, 895
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	2 cut(s)	265, 466
Alw26I	GTCTC	3 cut(s)	519, 822, 904
AlwI	GGATC	2 cut(s)	123, 529
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	6 cut(s)	199, 347, 428, 811, 917, 920
ApoI	RAATTY	1 cut(s)	69
Asp718I	GGTACC	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	186, 334, 440, 823
BccI	CCATC	3 cut(s)	265, 311, 889
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	267, 468
BciVI	GTATCC	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	519, 822, 904
BfaI	CTAG	5 cut(s)	218, 251, 395, 405, 441
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	6 cut(s)	200, 348, 429, 812, 918, 921
BlsI	GCNGC	6 cut(s)	201, 349, 430, 813, 919, 922
Bme1390I	CCNGG	2 cut(s)	267, 468
BmiI	GGNNCC	3 cut(s)	231, 555, 690
BmrFI	CCNGG	2 cut(s)	267, 468
BmrI	ACTGGG	2 cut(s)	44, 235
BmsI	GCATC	6 cut(s)	41, 358, 380, 520, 751, 823
BmuI	ACTGGG	2 cut(s)	44, 235
BpiI	GAAGAC	1 cut(s)	624
BpuEI	CTTGAG	3 cut(s)	66, 313, 875
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	64, 266
BsaWI	WCCGGW	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 895
Bse1I	ACTGG	6 cut(s)	50, 106, 230, 531, 563, 715
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	267, 468
BseDI	CCNNGG	2 cut(s)	64, 266
BseGI	GGATG	4 cut(s)	276, 280, 535, 605
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	685, 895
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	530, 717
BseNI	ACTGG	6 cut(s)	50, 106, 230, 531, 563, 715
BseXI	GCAGC	4 cut(s)	186, 334, 440, 823
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	688
BsiSI	CCGG	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	685, 895
BsmAI	GTCTC	3 cut(s)	519, 822, 904
BsnI	GGCC	1 cut(s)	445
Bso31I	GGTCTC	1 cut(s)	904
Bsp143I	GATC	3 cut(s)	115, 521, 874
BspACI	CCGC	2 cut(s)	418, 679
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	529, 718
BspLI	GGNNCC	3 cut(s)	231, 555, 690
BspPI	GGATC	2 cut(s)	123, 529
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	6 cut(s)	50, 106, 230, 531, 563, 715
BssECI	CCNNGG	2 cut(s)	64, 266
BssMI	GATC	3 cut(s)	115, 521, 874
Bst2UI	CCWGG	2 cut(s)	267, 468
Bst6I	CTCTTC	1 cut(s)	907
BstAFI	CTTAAG	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	352, 516, 726
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	276, 280, 535, 605
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	3 cut(s)	118, 524, 877
BstMAI	GTCTC	3 cut(s)	519, 822, 904
BstMBI	GATC	3 cut(s)	115, 521, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	541, 914
BstNI	CCWGG	2 cut(s)	267, 468
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	265, 466
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	186, 334, 440, 823
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	276, 280, 535, 605
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	194, 297, 689
CviAII	CATG	3 cut(s)	60, 89, 505
CviQI	GTAC	3 cut(s)	194, 297, 689
DdeI	CTNAG	3 cut(s)	352, 516, 726
DpnI	GATC	3 cut(s)	117, 523, 876
DpnII	GATC	3 cut(s)	115, 521, 874
Eam1104I	CTCTTC	1 cut(s)	907
EarI	CTCTTC	1 cut(s)	907
Eco147I	AGGCCT	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	3 cut(s)	302, 417, 569
EcoRII	CCWGG	2 cut(s)	265, 466
EcoRV	GATATC	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	3 cut(s)	63, 92, 508
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	3 cut(s)	59, 88, 504
FauI	CCCGC	1 cut(s)	686
FblI	GTMKAC	2 cut(s)	409, 801
Fnu4HI	GCNGC	6 cut(s)	200, 348, 429, 812, 918, 921
FokI	GGATG	4 cut(s)	283, 287, 542, 612
Fsp4HI	GCNGC	6 cut(s)	200, 348, 429, 812, 918, 921
FspBI	CTAG	5 cut(s)	218, 251, 395, 405, 441
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	6 cut(s)	200, 348, 429, 812, 918, 921
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	754
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	3 cut(s)	63, 92, 508
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	3 cut(s)	410, 568, 595
HindII	GTYRAC	3 cut(s)	410, 568, 595
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	209, 830
HpaI	GTTAAC	2 cut(s)	568, 595
HpaII	CCGG	1 cut(s)	754
Hpy166II	GTNNAC	7 cut(s)	136, 299, 410, 568, 595, 605, 802
Hpy188I	TCNGA	7 cut(s)	19, 388, 436, 490, 549, 616, 760
Hpy188III	TCNNGA	3 cut(s)	637, 862, 892
Hpy8I	GTNNAC	7 cut(s)	136, 299, 410, 568, 595, 605, 802
HpyAV	CCTTC	5 cut(s)	277, 544, 789, 844, 859
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	4 cut(s)	32, 371, 428, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	541, 914
HpyF3I	CTNAG	3 cut(s)	352, 516, 726
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	63, 92, 508
HspAI	GCGC	1 cut(s)	533
KpnI	GGTACC	1 cut(s)	692
KspAI	GTTAAC	2 cut(s)	568, 595
Kzo9I	GATC	3 cut(s)	115, 521, 874
LmnI	GCTCC	3 cut(s)	362, 469, 680
Lsp1109I	GCAGC	4 cut(s)	186, 334, 440, 823
LweI	GCATC	6 cut(s)	41, 358, 380, 520, 751, 823
MaeI	CTAG	5 cut(s)	218, 251, 395, 405, 441
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	2 cut(s)	91, 835
MalI	GATC	3 cut(s)	117, 523, 876
MboI	GATC	3 cut(s)	115, 521, 874
MboII	GAAGA	3 cut(s)	31, 629, 894
MflI	RGATCY	1 cut(s)	874
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	218, 824
MmeI	TCCRAC	2 cut(s)	800, 850
MnlI	CCTC	5 cut(s)	141, 184, 352, 836, 899
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	5 cut(s)	257, 423, 567, 594, 744
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	2 cut(s)	199, 681
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	1 cut(s)	754
MspR9I	CCNGG	2 cut(s)	267, 468
MvaI	CCWGG	2 cut(s)	267, 468
MwoI	GCNNNNNNNGC	2 cut(s)	541, 914
NdeII	GATC	3 cut(s)	115, 521, 874
NlaIII	CATG	3 cut(s)	63, 92, 508
NlaIV	GGNNCC	3 cut(s)	231, 555, 690
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	6 cut(s)	201, 349, 430, 813, 919, 922
PleI	GAGTC	2 cut(s)	217, 824
PpsI	GAGTC	2 cut(s)	217, 824
Psp6I	CCWGG	2 cut(s)	265, 466
PspGI	CCWGG	2 cut(s)	265, 466
PspN4I	GGNNCC	3 cut(s)	231, 555, 690
PsuI	RGATCY	1 cut(s)	874
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	195, 298, 690
RsaNI	GTAC	3 cut(s)	194, 297, 689
RseI	CAYNNNNRTG	1 cut(s)	376
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	5 cut(s)	257, 423, 567, 594, 744
SatI	GCNGC	6 cut(s)	200, 348, 429, 812, 918, 921
Sau3AI	GATC	3 cut(s)	115, 521, 874
SchI	GAGTC	2 cut(s)	218, 824
ScrFI	CCNGG	2 cut(s)	267, 468
SfaNI	GCATC	6 cut(s)	41, 358, 380, 520, 751, 823
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	4 cut(s)	81, 292, 743, 890
SmoI	CTYRAG	4 cut(s)	81, 292, 743, 890
Sse9I	AATT	1 cut(s)	69
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	2 cut(s)	418, 679
SspMI	CTAG	5 cut(s)	218, 251, 395, 405, 441
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	265, 466
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	3 cut(s)	118, 374, 409
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	296
Tru1I	TTAA	5 cut(s)	257, 423, 567, 594, 744
Tru9I	TTAA	5 cut(s)	257, 423, 567, 594, 744
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	6 cut(s)	199, 347, 428, 811, 917, 920
TspDTI	ATGAA	2 cut(s)	31, 927
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	531
Vha464I	CTTAAG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	409, 801
XspI	CTAG	5 cut(s)	218, 251, 395, 405, 441
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.