Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

8054331 .. 8057727

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGCAGCTACCATCAGAATCAGATGCCATAGCCAAAGTCTCATCGATATTCATATACCCAATAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCATCGGTCACTCCTACAGGATTTCGATGGGATCGGCAATGGTTAGTTGTAAACTACAAGGGGAGGGCGTATACTCAAAGGGTTGAACCAAAGCTTTCTTTGGTTCAGGTAGAGCTGCCAGATGAGGCATTCATAGAGGGTTGGGAACCTTCTAAAAGCTCTTATCTAGTACTAAAAGCACCTGGCATGGATGCACTTAAGGTTTCTTTGATTGCACCTCGAGAAGTATCAAATGGGGTTTCAGTATGGGAGTGGTCTGGTTCCGCATTAGACGAGGGAGCTGATGCATCAAAATGGTTTTCAGATTATCTTGGGAAACCCAGTCGACTTGTTCGCTTTAATACGGCTTCAGAAACTAGGCCTGTGGAACCTGAATATGCTCGAGGACACAATATCATGTTCTCCGACATGTACCCATACATGCTATTATCTCAGGGATCAATGGATGCACTAAATAATGTTTTGAAGGAACCCATACCAGTCAACCGTTTTAGACCCAACATTCTTGTTGAAGGTTGTGAACCATTTTCTGAGGACTTGTGGACAGAGATCAGAATAGACAAGCTTGCATTCCTGGGTGTCAAGCTATGCTCCCGCTGTAAGATACCAACGATCAATCAAGAGACTGGCATCGCAGGAGCTGAGCCAAATGAAACTCTTAGGAAAATCCGGTCTGATAGTGTCTTGCGTCCAACTCAAAAACAGAAAGGAAAGGTCTACTTTGGGCAGAATCTAGTTTTCAAAGGCTCTCTTACCGGGAAAAAGGGAAATGTCGTAAAGGTTGGAGATCTTGTTTATGTTCTCAAGAAGGTCTCCTCTGCTGATGAAGCAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

312

Amino Acids

34.6

Weight (kDa)

8.72

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	167, 421, 813
AciI	CCGC	2 cut(s)	360, 691
AclWI	GGATC	2 cut(s)	135, 541
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	267, 509
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	182, 562, 608, 838
AjnI	CCWGG	2 cut(s)	277, 669
AluBI	AGCT	9 cut(s)	10, 190, 211, 255, 377, 661, 682, 737, 932
AluI	AGCT	9 cut(s)	10, 190, 211, 255, 377, 661, 682, 737, 932
Alw26I	GTCTC	3 cut(s)	46, 713, 913
AlwI	GGATC	2 cut(s)	135, 541
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	2 cut(s)	315, 477
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	7, 211, 926, 929
ApoI	RAATTY	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	853
AvaI	CYCGRG	2 cut(s)	315, 477
BbvI	GCAGC	2 cut(s)	19, 198
BccI	CCATC	2 cut(s)	22, 117
BceAI	ACGGC	2 cut(s)	60, 456
BciT130I	CCWGG	2 cut(s)	279, 671
BcnI	CCSGG	1 cut(s)	853
BcoDI	GTCTC	3 cut(s)	46, 713, 913
BfaI	CTAG	3 cut(s)	263, 453, 830
BfmI	CTRYAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	4 cut(s)	8, 212, 927, 930
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	4 cut(s)	9, 213, 928, 931
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	3 cut(s)	279, 671, 853
BmeT110I	CYCGRG	2 cut(s)	315, 477
BmiI	GGNNCC	4 cut(s)	243, 358, 465, 567
BmrFI	CCNGG	3 cut(s)	279, 671, 853
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	7 cut(s)	16, 107, 277, 370, 392, 532, 735
BmuI	ACTGGG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	78, 884
BpuMI	CCSGG	1 cut(s)	853
Bsa29I	ATCGAT	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	913
BsaJI	CCNNGG	2 cut(s)	76, 670
BsaWI	WCCGGW	1 cut(s)	765
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bse1I	ACTGG	3 cut(s)	417, 575, 727
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	279, 671
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	76, 670
BseGI	GGATG	2 cut(s)	292, 547
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	542, 618, 729
BseNI	ACTGG	3 cut(s)	417, 575, 727
BseRI	GAGGAG	1 cut(s)	901
BseXI	GCAGC	2 cut(s)	19, 198
BshFI	GGCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	315, 477
BsiSI	CCGG	2 cut(s)	766, 852
BsmAI	GTCTC	3 cut(s)	46, 713, 913
BsmI	GAATGC	2 cut(s)	224, 665
BsnI	GGCC	1 cut(s)	457
Bso31I	GGTCTC	1 cut(s)	913
BsoBI	CYCGRG	2 cut(s)	315, 477
Bsp143I	GATC	5 cut(s)	127, 533, 645, 708, 883
Bsp1720I	GCTNAGC	1 cut(s)	738
BspACI	CCGC	2 cut(s)	360, 691
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	3 cut(s)	541, 619, 730
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	4 cut(s)	243, 358, 465, 567
BspPI	GGATC	2 cut(s)	135, 541
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	417, 575, 727
BssECI	CCNNGG	2 cut(s)	76, 670
BssMI	GATC	5 cut(s)	127, 533, 645, 708, 883
BssNAI	GTATAC	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	279, 671
Bst4CI	ACNGT	1 cut(s)	584
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	4 cut(s)	528, 627, 738, 755
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	292, 547
BstKTI	GATC	5 cut(s)	130, 536, 648, 711, 886
BstMAI	GTCTC	3 cut(s)	46, 713, 913
BstMBI	GATC	5 cut(s)	127, 533, 645, 708, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	923
BstNI	CCWGG	2 cut(s)	279, 671
BstNSI	RCATGY	2 cut(s)	508, 520
BstSCI	CCNGG	3 cut(s)	277, 669, 851
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	19, 198
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BstZ17I	GTATAC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	712
BtsCI	GGATG	2 cut(s)	292, 547
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	266, 508
CviAII	CATG	5 cut(s)	72, 283, 493, 505, 517
CviQI	GTAC	2 cut(s)	266, 508
DdeI	CTNAG	4 cut(s)	528, 627, 738, 755
DpnI	GATC	5 cut(s)	129, 535, 647, 710, 885
DpnII	GATC	5 cut(s)	127, 533, 645, 708, 883
Eco147I	AGGCCT	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	315, 477
EcoRII	CCWGG	2 cut(s)	277, 669
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	5 cut(s)	75, 286, 496, 508, 520
FalI	AAGNNNNNCTT	4 cut(s)	800, 832, 831, 863
FatI	CATG	5 cut(s)	71, 282, 492, 504, 516
FauI	CCCGC	1 cut(s)	698
FblI	GTMKAC	3 cut(s)	167, 421, 813
Fnu4HI	GCNGC	4 cut(s)	8, 212, 927, 930
FokI	GGATG	2 cut(s)	299, 554
Fsp4HI	GCNGC	4 cut(s)	8, 212, 927, 930
FspBI	CTAG	3 cut(s)	263, 453, 830
GluI	GCNGC	4 cut(s)	8, 212, 927, 930
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	2 cut(s)	766, 852
HgaI	GACGC	1 cut(s)	773
Hin1II	CATG	5 cut(s)	75, 286, 496, 508, 520
HincII	GTYRAC	2 cut(s)	422, 580
HindII	GTYRAC	2 cut(s)	422, 580
HindIII	AAGCTT	2 cut(s)	188, 659
HinfI	GANTC	2 cut(s)	20, 826
HpaII	CCGG	2 cut(s)	766, 852
Hpy166II	GTNNAC	7 cut(s)	148, 168, 422, 580, 617, 639, 814
Hpy188I	TCNGA	8 cut(s)	19, 25, 400, 448, 502, 628, 650, 772
Hpy188III	TCNNGA	3 cut(s)	317, 716, 901
Hpy8I	GTNNAC	7 cut(s)	148, 168, 422, 580, 617, 639, 814
HpyAV	CCTTC	4 cut(s)	255, 556, 602, 898
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4V	TGCA	5 cut(s)	290, 311, 383, 545, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	923
HpyF3I	CTNAG	4 cut(s)	528, 627, 738, 755
Hsp92II	CATG	5 cut(s)	75, 286, 496, 508, 520
Kzo9I	GATC	5 cut(s)	127, 533, 645, 708, 883
LmnI	GCTCC	4 cut(s)	4, 374, 692, 734
Lsp1109I	GCAGC	2 cut(s)	19, 198
LweI	GCATC	7 cut(s)	16, 107, 277, 370, 392, 532, 735
MaeI	CTAG	3 cut(s)	263, 453, 830
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	129, 535, 647, 710, 885
MboI	GATC	5 cut(s)	127, 533, 645, 708, 883
MflI	RGATCY	1 cut(s)	883
MluCI	AATT	1 cut(s)	81
MmeI	TCCRAC	3 cut(s)	525, 812, 859
MnlI	CCTC	8 cut(s)	153, 214, 226, 324, 364, 473, 622, 922
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	2 cut(s)	294, 435
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	766, 852
MspR9I	CCNGG	3 cut(s)	279, 671, 853
Mva1269I	GAATGC	2 cut(s)	224, 665
MvaI	CCWGG	2 cut(s)	279, 671
MwoI	GCNNNNNNNGC	1 cut(s)	923
NciI	CCSGG	1 cut(s)	853
NdeII	GATC	5 cut(s)	127, 533, 645, 708, 883
NlaIII	CATG	5 cut(s)	75, 286, 496, 508, 520
NlaIV	GGNNCC	4 cut(s)	243, 358, 465, 567
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	2 cut(s)	508, 520
PaeR7I	CTCGAG	2 cut(s)	315, 477
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	504
PctI	GAATGC	2 cut(s)	224, 665
PfeI	GAWTC	2 cut(s)	20, 826
PkrI	GCNGC	4 cut(s)	9, 213, 928, 931
PscI	ACATGT	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	277, 669
PspGI	CCWGG	2 cut(s)	277, 669
PspN4I	GGNNCC	4 cut(s)	243, 358, 465, 567
PspXI	VCTCGAGB	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	2 cut(s)	267, 509
RsaNI	GTAC	2 cut(s)	266, 508
RseI	CAYNNNNRTG	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	294, 435
SatI	GCNGC	4 cut(s)	8, 212, 927, 930
Sau3AI	GATC	5 cut(s)	127, 533, 645, 708, 883
ScaI	AGTACT	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	279, 671, 853
SfaNI	GCATC	7 cut(s)	16, 107, 277, 370, 392, 532, 735
SfcI	CTRYAG	1 cut(s)	111
Sfr274I	CTCGAG	2 cut(s)	315, 477
SlaI	CTCGAG	2 cut(s)	315, 477
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	5 cut(s)	93, 293, 315, 477, 899
SmoI	CTYRAG	5 cut(s)	93, 293, 315, 477, 899
Sse9I	AATT	1 cut(s)	81
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	360, 691
SspMI	CTAG	3 cut(s)	263, 453, 830
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	277, 669, 851
TaaI	ACNGT	1 cut(s)	584
TaqI	TCGA	5 cut(s)	47, 121, 316, 421, 478
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	20, 826
Tru1I	TTAA	2 cut(s)	294, 435
Tru9I	TTAA	2 cut(s)	294, 435
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	4 cut(s)	7, 211, 926, 929
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	43, 217, 762, 936
Vha464I	CTTAAG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	2 cut(s)	508, 520
XhoI	CTCGAG	2 cut(s)	315, 477
XmiI	GTMKAC	3 cut(s)	167, 421, 813
XspI	CTAG	3 cut(s)	263, 453, 830
ZrmI	AGTACT	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.