Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019607.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1861

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaggatttttcctgtctgttttggatgtacaggttttcgttgggatcgacaatggttagtagtaaactacaaagggagggcatatactcaaagagttgagccaaagcttgctttggttgaggtacagctgccaaatgagtcattcctagagaactgggaacctactaaaagctcttatctagtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgctgccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcgacttgtccgctttaatgcagcttcagaaactaggcctgtagatactgaatatgctcctggacaccaaataatgttctccgatatgtatacatacatgctattgtctcagggatcactggatgcgctaaatgagcttctgaaggaacccataccagttaaccgatttagacccaacattcttgttaacggatgtgaaccattttccgaagacctatggacagatatcaggatagacaagctaacatttcaaggtgtcaagctatgctcccgctgtaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

206

Amino Acids

23.5

Weight (kDa)

5.34

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	340, 428
AciI	CCGC	2 cut(s)	349, 610
AclWI	GGATC	2 cut(s)	54, 460
AcuI	CTGAAG	3 cut(s)	233, 348, 500
AfaI	GTAC	3 cut(s)	31, 126, 229
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	196, 397
AluBI	AGCT	8 cut(s)	109, 130, 174, 296, 362, 475, 580, 601
AluI	AGCT	8 cut(s)	109, 130, 174, 296, 362, 475, 580, 601
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	54, 460
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	130, 278, 359
AspLEI	GCGC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	117, 265, 371
BccI	CCATC	2 cut(s)	196, 242
BciT130I	CCWGG	2 cut(s)	198, 399
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	5 cut(s)	149, 182, 326, 336, 372
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	3 cut(s)	131, 279, 360
BlsI	GCNGC	3 cut(s)	132, 280, 361
Bme1390I	CCNGG	2 cut(s)	198, 399
BmiI	GGNNCC	2 cut(s)	162, 486
BmrFI	CCNGG	2 cut(s)	198, 399
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	289, 311, 451
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	197
Bse1I	ACTGG	3 cut(s)	161, 462, 494
BseBI	CCWGG	2 cut(s)	198, 399
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	5 cut(s)	32, 207, 211, 466, 536
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	3 cut(s)	161, 462, 494
BseXI	GCAGC	3 cut(s)	117, 265, 371
BshFI	GGCC	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	46, 452
BspACI	CCGC	2 cut(s)	349, 610
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	162, 486
BspPI	GGATC	2 cut(s)	54, 460
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	161, 462, 494
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	2 cut(s)	46, 452
BssNAI	GTATAC	1 cut(s)	429
Bst1107I	GTATAC	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	198, 399
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	283, 447
BstF5I	GGATG	5 cut(s)	32, 207, 211, 466, 536
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	2 cut(s)	49, 455
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	46, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	2 cut(s)	198, 399
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	196, 397
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	117, 265, 371
BstV2I	GAAGAC	1 cut(s)	555
BstZ17I	GTATAC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	376
BtsCI	GGATG	5 cut(s)	32, 207, 211, 466, 536
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	30, 125, 228
CviAII	CATG	1 cut(s)	436
CviQI	GTAC	3 cut(s)	30, 125, 228
DdeI	CTNAG	2 cut(s)	283, 447
DpnI	GATC	2 cut(s)	48, 454
DpnII	GATC	2 cut(s)	46, 452
Eco147I	AGGCCT	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	565
Eco57I	CTGAAG	3 cut(s)	233, 348, 500
EcoRII	CCWGG	2 cut(s)	196, 397
EcoRV	GATATC	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	304
FaeI	CATG	1 cut(s)	439
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FatI	CATG	1 cut(s)	435
FblI	GTMKAC	2 cut(s)	340, 428
Fnu4HI	GCNGC	3 cut(s)	131, 279, 360
FokI	GGATG	5 cut(s)	39, 214, 218, 473, 543
Fsp4HI	GCNGC	3 cut(s)	131, 279, 360
FspBI	CTAG	5 cut(s)	149, 182, 326, 336, 372
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	3 cut(s)	131, 279, 360
HaeIII	GGCC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	1 cut(s)	439
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	3 cut(s)	341, 499, 526
HindII	GTYRAC	3 cut(s)	341, 499, 526
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	2 cut(s)	499, 526
Hpy166II	GTNNAC	7 cut(s)	67, 230, 341, 429, 499, 526, 536
Hpy188I	TCNGA	5 cut(s)	319, 367, 421, 480, 547
Hpy188III	TCNNGA	1 cut(s)	568
Hpy8I	GTNNAC	7 cut(s)	67, 230, 341, 429, 499, 526, 536
HpyAV	CCTTC	2 cut(s)	208, 475
HpyCH4V	TGCA	2 cut(s)	302, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	2 cut(s)	283, 447
Hsp92II	CATG	1 cut(s)	439
HspAI	GCGC	1 cut(s)	464
KspAI	GTTAAC	2 cut(s)	499, 526
Kzo9I	GATC	2 cut(s)	46, 452
LmnI	GCTCC	3 cut(s)	293, 400, 611
Lsp1109I	GCAGC	3 cut(s)	117, 265, 371
LweI	GCATC	3 cut(s)	289, 311, 451
MaeI	CTAG	5 cut(s)	149, 182, 326, 336, 372
MalI	GATC	2 cut(s)	48, 454
MboI	GATC	2 cut(s)	46, 452
MboII	GAAGA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	72, 115, 283
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	4 cut(s)	188, 354, 498, 525
MslI	CAYNNNNRTG	1 cut(s)	307
MspA1I	CMGCKG	2 cut(s)	130, 612
MspR9I	CCNGG	2 cut(s)	198, 399
MvaI	CCWGG	2 cut(s)	198, 399
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeII	GATC	2 cut(s)	46, 452
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	2 cut(s)	162, 486
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	132, 280, 361
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	196, 397
PspGI	CCWGG	2 cut(s)	196, 397
PspN4I	GGNNCC	2 cut(s)	162, 486
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	3 cut(s)	31, 126, 229
RsaNI	GTAC	3 cut(s)	30, 125, 228
RseI	CAYNNNNRTG	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	339
SaqAI	TTAA	4 cut(s)	188, 354, 498, 525
SatI	GCNGC	3 cut(s)	131, 279, 360
Sau3AI	GATC	2 cut(s)	46, 452
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	198, 399
SfaNI	GCATC	3 cut(s)	289, 311, 451
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	349, 610
SspMI	CTAG	5 cut(s)	149, 182, 326, 336, 372
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	196, 397
TaqI	TCGA	3 cut(s)	49, 305, 340
TatI	WGTACW	2 cut(s)	29, 227
Tru1I	TTAA	4 cut(s)	188, 354, 498, 525
Tru9I	TTAA	4 cut(s)	188, 354, 498, 525
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	3 cut(s)	130, 278, 359
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	462
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	2 cut(s)	340, 428
XspI	CTAG	5 cut(s)	149, 182, 326, 336, 372
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.