RchiOBHm_Chr5g0021271

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001394
Physical Location & Seq
Reverse (-)
15522669 .. 15526134
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30133

Sequence Viewer

Length: 966 bp
ATGGAGAAGCAACCATCACAAGAAGCCATAGCCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGAGGGATTTCGGTTTCTGAAGCACCTATCACCCCTACTGGGTTTCGATGGGATCGACAATGGTTAGTTATAAATGAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAGCTTGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGGTTGGGAACCTACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGAACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAAATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGACGAGGGAGCTGATGCATCAAAATGGTTTTCTAACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCTTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCTGACATTTTTCCATACTTAATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCGATTAACCGTTTCAGACCCAACATTCTTGTTGATGGTTGTGAACCATTTTCAGAAGACTTATGGACAGATGTCAGGATAAACAAGTTCACATTTCAATGCTGCATGCTGTGCTACCGCTGCAAGATACCTACGGTGAATCAAGAGACTGGCATTCAAGGAACTGAGCCAAATGAAACTCTCAAGAAATTTCGATCGGATGCAACTGTGTATCCATCTCGGAAACAGCGGGGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

321

Amino Acids

36.19

Weight (kDa)

6.84

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 11 - 138 2.9e-33 MOSC N-terminal beta barrel domain
MOSC PF03473 172 - 305 4.1e-22 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccI GTMKAC 2 cut(s) 418, 840
AccIII TCCGGA 1 cut(s) 958
AciI CCGC 2 cut(s) 718, 829
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 4 cut(s) 111, 311, 426, 608
AfaI GTAC 2 cut(s) 204, 600
AfiI CCNNNNNNNGG 2 cut(s) 111, 934
AgsI TTSAA 4 cut(s) 179, 336, 698, 758
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 187, 208, 252, 374, 440
AluI AGCT 5 cut(s) 187, 208, 252, 374, 440
Alw26I GTCTC 4 cut(s) 43, 480, 558, 740
AlwI GGATC 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 958
ApeKI GCWGC 5 cut(s) 249, 356, 437, 702, 720
ApoI RAATTY 1 cut(s) 788
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 94, 748
AvaII GGWCC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 663
BbvI GCAGC 5 cut(s) 261, 343, 449, 689, 707
BccI CCATC 4 cut(s) 22, 114, 629, 823
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 2 cut(s) 562, 822
BcoDI GTCTC 4 cut(s) 43, 480, 558, 740
BfaI CTAG 5 cut(s) 227, 246, 414, 450, 857
BfuI GTATCC 2 cut(s) 562, 822
BglII AGATCT 1 cut(s) 913
BisI GCNGC 5 cut(s) 250, 357, 438, 703, 721
BlsI GCNGC 5 cut(s) 251, 358, 439, 704, 722
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 3 cut(s) 240, 492, 594
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 5 cut(s) 367, 389, 569, 592, 790
BmuI ACTGGG 1 cut(s) 120
BoxI GACNNNNGTC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 767
BsaI GGTCTC 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 934
Bse1I ACTGG 3 cut(s) 59, 115, 754
BseAI TCCGGA 1 cut(s) 958
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 289, 805
BseLI CCNNNNNNNGG 2 cut(s) 111, 934
BseMII CTCAG 2 cut(s) 569, 756
BseNI ACTGG 3 cut(s) 59, 115, 754
BseXI GCAGC 5 cut(s) 261, 343, 449, 689, 707
BseYI CCCAGC 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 797
BsiEI CGRYCG 1 cut(s) 797
BsiSI CCGG 1 cut(s) 959
BslI CCNNNNNNNGG 2 cut(s) 111, 934
BsmAI GTCTC 4 cut(s) 43, 480, 558, 740
BsmBI CGTCTC 1 cut(s) 558
BsmI GAATGC 2 cut(s) 221, 753
Bso31I GGTCTC 1 cut(s) 480
Bsp13I TCCGGA 1 cut(s) 958
Bsp143I GATC 3 cut(s) 124, 794, 913
BspACI CCGC 2 cut(s) 718, 829
BspCNI CTCAG 2 cut(s) 568, 757
BspEI TCCGGA 1 cut(s) 958
BspLI GGNNCC 3 cut(s) 240, 492, 594
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 480
BsrI ACTGG 3 cut(s) 59, 115, 754
BssMI GATC 3 cut(s) 124, 794, 913
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 611, 736, 808
BstAPI GCANNNNNTGC 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 189, 707, 883
BstDEI CTNAG 3 cut(s) 361, 555, 765
BstF5I GGATG 2 cut(s) 289, 805
BstKTI GATC 3 cut(s) 127, 797, 916
BstMAI GTCTC 4 cut(s) 43, 480, 558, 740
BstMBI GATC 3 cut(s) 124, 794, 913
BstMCI CGRYCG 1 cut(s) 797
BstMWI GCNNNNNNNGC 3 cut(s) 557, 711, 720
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 671
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 5 cut(s) 261, 343, 449, 689, 707
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
BsuI GTATCC 2 cut(s) 562, 822
BtsCI GGATG 2 cut(s) 289, 805
Cac8I GCNNGC 3 cut(s) 189, 707, 883
Cfr13I GGNCC 1 cut(s) 592
CseI GACGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 203, 599
CviAII CATG 6 cut(s) 69, 280, 520, 706, 923, 934
CviJI RGCY 8 cut(s) 26, 32, 187, 208, 252, 374, 440, 769
CviKI_1 RGCY 8 cut(s) 26, 32, 187, 208, 252, 374, 440, 769
CviQI GTAC 2 cut(s) 203, 599
DdeI CTNAG 3 cut(s) 361, 555, 765
DpnI GATC 3 cut(s) 126, 796, 915
DpnII GATC 3 cut(s) 124, 794, 913
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 592
Eco57I CTGAAG 4 cut(s) 111, 311, 426, 608
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 6 cut(s) 72, 283, 523, 709, 926, 937
FatI CATG 6 cut(s) 68, 279, 519, 705, 922, 933
FauI CCCGC 1 cut(s) 822
FblI GTMKAC 2 cut(s) 418, 840
Fnu4HI GCNGC 5 cut(s) 250, 357, 438, 703, 721
FokI GGATG 2 cut(s) 296, 812
Fsp4HI GCNGC 5 cut(s) 250, 357, 438, 703, 721
FspBI CTAG 5 cut(s) 227, 246, 414, 450, 857
GluI GCNGC 5 cut(s) 250, 357, 438, 703, 721
GsaI CCCAGC 1 cut(s) 507
HapII CCGG 1 cut(s) 959
HgaI GACGC 1 cut(s) 540
Hin1II CATG 6 cut(s) 72, 283, 523, 709, 926, 937
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 304, 739, 869
HpaII CCGG 1 cut(s) 959
HphI GGTGA 2 cut(s) 94, 748
Hpy166II GTNNAC 5 cut(s) 308, 419, 644, 690, 841
Hpy188I TCNGA 9 cut(s) 91, 445, 529, 588, 617, 655, 799, 822, 876
Hpy188III TCNNGA 4 cut(s) 676, 743, 784, 959
Hpy8I GTNNAC 5 cut(s) 308, 419, 644, 690, 841
HpyAV CCTTC 4 cut(s) 474, 583, 828, 883
HpyCH4III ACNGT 3 cut(s) 611, 736, 808
HpyCH4V TGCA 6 cut(s) 380, 437, 705, 723, 803, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 711, 720
HpyF3I CTNAG 3 cut(s) 361, 555, 765
Hsp92II CATG 6 cut(s) 72, 283, 523, 709, 926, 937
Kpn2I TCCGGA 1 cut(s) 958
Kzo9I GATC 3 cut(s) 124, 794, 913
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 5 cut(s) 261, 343, 449, 689, 707
LweI GCATC 5 cut(s) 367, 389, 569, 592, 790
MaeI CTAG 5 cut(s) 227, 246, 414, 450, 857
MalI GATC 3 cut(s) 126, 796, 915
MboI GATC 3 cut(s) 124, 794, 913
MboII GAAGA 5 cut(s) 40, 304, 668, 908, 911
MflI RGATCY 1 cut(s) 913
MluCI AATT 1 cut(s) 788
MlyI GAGTC 2 cut(s) 313, 863
MmeI TCCRAC 1 cut(s) 889
MnlI CCTC 7 cut(s) 68, 193, 211, 223, 361, 938, 952
Mph1103I ATGCAT 1 cut(s) 382
MroI TCCGGA 1 cut(s) 958
MseI TTAA 5 cut(s) 63, 266, 432, 545, 606
MslI CAYNNNNRTG 2 cut(s) 385, 697
MspA1I CMGCKG 2 cut(s) 720, 829
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 2 cut(s) 221, 753
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 557, 711, 720
NdeII GATC 3 cut(s) 124, 794, 913
NlaIII CATG 6 cut(s) 72, 283, 523, 709, 926, 937
NlaIV GGNNCC 3 cut(s) 240, 492, 594
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 709
PaeI GCATGC 1 cut(s) 709
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 2 cut(s) 221, 753
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 5 cut(s) 251, 358, 439, 704, 722
Ple19I CGATCG 1 cut(s) 797
PleI GAGTC 2 cut(s) 312, 863
PpsI GAGTC 2 cut(s) 312, 863
PpuMI RGGWCCY 1 cut(s) 592
PshAI GACNNNNGTC 1 cut(s) 671
PsiI TTATAA 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 240, 492, 594
PspPI GGNCC 1 cut(s) 592
PspPPI RGGWCCY 1 cut(s) 592
PsuI RGATCY 1 cut(s) 913
PvuI CGATCG 1 cut(s) 797
RsaI GTAC 2 cut(s) 204, 600
RsaNI GTAC 2 cut(s) 203, 599
RseI CAYNNNNRTG 2 cut(s) 385, 697
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 5 cut(s) 63, 266, 432, 545, 606
SatI GCNGC 5 cut(s) 250, 357, 438, 703, 721
Sau3AI GATC 3 cut(s) 124, 794, 913
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 2 cut(s) 313, 863
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 5 cut(s) 367, 389, 569, 592, 790
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 385, 697
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SphI GCATGC 1 cut(s) 709
Sse9I AATT 1 cut(s) 788
SsiI CCGC 2 cut(s) 718, 829
SspMI CTAG 5 cut(s) 227, 246, 414, 450, 857
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 611, 736, 808
TaqI TCGA 5 cut(s) 73, 118, 127, 418, 793
TasI AATT 1 cut(s) 788
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 5 cut(s) 63, 266, 432, 545, 606
Tru9I TTAA 5 cut(s) 63, 266, 432, 545, 606
TseI GCWGC 5 cut(s) 249, 356, 437, 702, 720
TspDTI ATGAA 6 cut(s) 40, 162, 300, 789, 911, 966
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 1 cut(s) 788
XceI RCATGY 1 cut(s) 709
XmiI GTMKAC 2 cut(s) 418, 840
XspI CTAG 5 cut(s) 227, 246, 414, 450, 857
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.