Rh2DG455600

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001394
Physical Location & Seq
Reverse (-)
65888145 .. 65903356
15212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG455600.1

Sequence Viewer

Length: 591 bp
ATGGAAGAGAAAATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTGAAGCTCCTGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGTTTAGTAGTAAACTACAAAGGGAAAGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAACTGCCAAATGAGGCATTCCTAGAGAATTTGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGCACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTACCTACAATCAATCAAGCTACAGGCATTGCAGGAATTGAGACAACCGACACTCTTAAGAAAATCCGGTCTGATGCAATTTTACGTCCAACAGGGGAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGGGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

196

Amino Acids

21.91

Weight (kDa)

8.97

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 13 - 123 6e-27 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 465
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 81, 235
AcuI CTGAAG 2 cut(s) 114, 314
AfaI GTAC 2 cut(s) 207, 353
AfiI CCNNNNNNNGG 1 cut(s) 559
AflII CTTAAG 1 cut(s) 406
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 4 cut(s) 98, 190, 255, 370
AluI AGCT 4 cut(s) 98, 190, 255, 370
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 385, 568
AlwI GGATC 1 cut(s) 135
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 475, 581
ApoI RAATTY 2 cut(s) 81, 235
Asp718I GGTACC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 487
BccI CCATC 3 cut(s) 277, 323, 553
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 385, 568
BfaI CTAG 2 cut(s) 230, 263
BfmI CTRYAG 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 406
BglII AGATCT 1 cut(s) 538
BisI GCNGC 2 cut(s) 476, 582
BlsI GCNGC 2 cut(s) 477, 583
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 243, 353
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 53, 414, 487
BmuI ACTGGG 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 325, 539
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 76, 278
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 62, 118
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 76, 278
BseGI GGATG 2 cut(s) 288, 292
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 377
BseNI ACTGG 2 cut(s) 62, 118
BseXI GCAGC 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 385, 568
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 127, 538
BspLI GGNNCC 2 cut(s) 243, 353
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 351
BspTI CTTAAG 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 2 cut(s) 62, 118
BssECI CCNNGG 2 cut(s) 76, 278
BssMI GATC 2 cut(s) 127, 538
Bst2UI CCWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 571
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 288, 292
BstKTI GATC 2 cut(s) 130, 541
BstMAI GTCTC 2 cut(s) 385, 568
BstMBI GATC 2 cut(s) 127, 538
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 288, 292
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 92
Csp6I GTAC 2 cut(s) 206, 352
CviAII CATG 1 cut(s) 72
CviJI RGCY 5 cut(s) 98, 184, 190, 255, 370
CviKI_1 RGCY 5 cut(s) 98, 184, 190, 255, 370
CviQI GTAC 2 cut(s) 206, 352
DpnI GATC 2 cut(s) 129, 540
DpnII GATC 2 cut(s) 127, 538
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
Eco31I GGTCTC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 114, 314
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 75
FaiI YATR 7 cut(s) 56, 58, 73, 166, 168, 343, 549
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 506
FatI CATG 1 cut(s) 71
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 476, 582
FokI GGATG 2 cut(s) 295, 299
Fsp4HI GCNGC 2 cut(s) 476, 582
FspBI CTAG 2 cut(s) 230, 263
GluI GCNGC 2 cut(s) 476, 582
HapII CCGG 1 cut(s) 417
Hin1II CATG 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 494
HpaII CCGG 1 cut(s) 417
Hpy166II GTNNAC 2 cut(s) 148, 466
Hpy188I TCNGA 3 cut(s) 31, 94, 423
Hpy188III TCNNGA 2 cut(s) 526, 556
Hpy8I GTNNAC 2 cut(s) 148, 466
HpyAV CCTTC 5 cut(s) 13, 289, 453, 508, 523
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 44, 382, 427, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 75
KpnI GGTACC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 127, 538
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 3 cut(s) 53, 414, 487
MaeI CTAG 2 cut(s) 230, 263
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 129, 540
MboI GATC 2 cut(s) 127, 538
MboII GAAGA 3 cut(s) 17, 43, 558
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 81, 235, 386, 428
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 463, 514
MnlI CCTC 5 cut(s) 196, 214, 483, 500, 563
MseI TTAA 2 cut(s) 269, 407
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 578
NdeII GATC 2 cut(s) 127, 538
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 243, 353
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PctI GAATGC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 477, 583
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 243, 353
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 207, 353
RsaNI GTAC 2 cut(s) 206, 352
SaqAI TTAA 2 cut(s) 269, 407
SatI GCNGC 2 cut(s) 476, 582
Sau3AI GATC 2 cut(s) 127, 538
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 3 cut(s) 53, 414, 487
SfcI CTRYAG 1 cut(s) 371
SmlI CTYRAG 3 cut(s) 304, 406, 554
SmoI CTYRAG 3 cut(s) 304, 406, 554
Sse9I AATT 4 cut(s) 81, 235, 386, 428
SspMI CTAG 2 cut(s) 230, 263
StyD4I CCNGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 438
TaqI TCGA 1 cut(s) 130
TasI AATT 4 cut(s) 81, 235, 386, 428
Tru1I TTAA 2 cut(s) 269, 407
Tru9I TTAA 2 cut(s) 269, 407
TseI GCWGC 2 cut(s) 475, 581
TspDTI ATGAA 2 cut(s) 43, 591
Vha464I CTTAAG 1 cut(s) 406
XapI RAATTY 2 cut(s) 81, 235
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 2 cut(s) 230, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.