Rh5DG155400

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001394
Physical Location & Seq
Reverse (-)
15825111 .. 15827928
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG155400.1

Sequence Viewer

Length: 726 bp
ATGCCTTCAACACATCGAGTGTACTTAGAACCACCTATCATTCACTTTGCAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCAGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGAACCTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCACTAAATGAGCTTCTGAAGGTACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGAGATCAGGATAGAGAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCAACTGGCATTGCAGGACCTGAGCCAAACGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAGTGTCATGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

6.33

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 18 - 68 1.2e-07 MOSC N-terminal beta barrel domain
MOSC PF03473 91 - 227 8.5e-21 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 352, 487
AccB1I GGYRCC 2 cut(s) 352, 487
AccI GTMKAC 2 cut(s) 208, 600
AciI CCGC 2 cut(s) 217, 478
AclWI GGATC 1 cut(s) 328
AcuI CTGAAG 3 cut(s) 101, 216, 368
AfaI GTAC 4 cut(s) 23, 97, 354, 489
AfiI CCNNNNNNNGG 2 cut(s) 484, 694
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 2 cut(s) 9, 458
AjnI CCWGG 2 cut(s) 64, 265
AluBI AGCT 6 cut(s) 164, 230, 343, 448, 469, 719
AluI AGCT 6 cut(s) 164, 230, 343, 448, 469, 719
Alw26I GTCTC 3 cut(s) 318, 621, 703
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 4 cut(s) 146, 227, 716, 719
Asp718I GGTACC 2 cut(s) 352, 487
AspS9I GGNCC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 2 cut(s) 352, 487
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 158, 239, 706
BccI CCATC 3 cut(s) 64, 110, 688
BciT130I CCWGG 2 cut(s) 66, 267
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 3 cut(s) 318, 621, 703
BfaI CTAG 3 cut(s) 194, 204, 240
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 306
BglII AGATCT 1 cut(s) 673
BisI GCNGC 4 cut(s) 147, 228, 717, 720
BlsI GCNGC 4 cut(s) 148, 229, 718, 721
Bme1390I CCNGG 2 cut(s) 66, 267
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 354, 489
BmrFI CCNGG 2 cut(s) 66, 267
BmsI GCATC 4 cut(s) 157, 179, 319, 550
BpiI GAAGAC 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 112, 674
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 694
Bse1I ACTGG 3 cut(s) 330, 362, 514
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 2 cut(s) 66, 267
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 4 cut(s) 75, 79, 334, 404
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 484, 694
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 329, 516
BseNI ACTGG 3 cut(s) 330, 362, 514
BseXI GCAGC 3 cut(s) 158, 239, 706
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 2 cut(s) 352, 487
BsiSI CCGG 1 cut(s) 553
BslI CCNNNNNNNGG 2 cut(s) 484, 694
BsmAI GTCTC 3 cut(s) 318, 621, 703
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 703
Bsp143I GATC 3 cut(s) 320, 432, 673
BspACI CCGC 2 cut(s) 217, 478
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 328, 517
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 354, 489
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 2 cut(s) 352, 487
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 3 cut(s) 330, 362, 514
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 3 cut(s) 320, 432, 673
Bst2UI CCWGG 2 cut(s) 66, 267
Bst6I CTCTTC 1 cut(s) 706
BstAFI CTTAAG 1 cut(s) 542
BstDEI CTNAG 4 cut(s) 25, 151, 315, 525
BstF5I GGATG 4 cut(s) 75, 79, 334, 404
BstKTI GATC 3 cut(s) 323, 435, 676
BstMAI GTCTC 3 cut(s) 318, 621, 703
BstMBI GATC 3 cut(s) 320, 432, 673
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 2 cut(s) 66, 267
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 64, 265
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 158, 239, 706
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 4 cut(s) 75, 79, 334, 404
BtsIMutI CAGTG 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 4 cut(s) 22, 96, 353, 488
CviAII CATG 2 cut(s) 304, 661
CviJI RGCY 9 cut(s) 149, 164, 230, 244, 343, 448, 469, 529, 719
CviKI_1 RGCY 9 cut(s) 149, 164, 230, 244, 343, 448, 469, 529, 719
CviQI GTAC 4 cut(s) 22, 96, 353, 488
DdeI CTNAG 4 cut(s) 25, 151, 315, 525
DpnI GATC 3 cut(s) 322, 434, 675
DpnII GATC 3 cut(s) 320, 432, 673
Eam1104I CTCTTC 1 cut(s) 706
EarI CTCTTC 1 cut(s) 706
Eco147I AGGCCT 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 3 cut(s) 101, 216, 368
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 64, 265
EcoT22I ATGCAT 1 cut(s) 172
FaeI CATG 2 cut(s) 307, 664
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 2 cut(s) 303, 660
FauI CCCGC 1 cut(s) 485
FblI GTMKAC 2 cut(s) 208, 600
Fnu4HI GCNGC 4 cut(s) 147, 228, 717, 720
FokI GGATG 4 cut(s) 82, 86, 341, 411
Fsp4HI GCNGC 4 cut(s) 147, 228, 717, 720
FspBI CTAG 3 cut(s) 194, 204, 240
GluI GCNGC 4 cut(s) 147, 228, 717, 720
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 553
Hin1II CATG 2 cut(s) 307, 664
HincII GTYRAC 3 cut(s) 209, 367, 394
HindII GTYRAC 3 cut(s) 209, 367, 394
HinfI GANTC 2 cut(s) 613, 629
HpaI GTTAAC 2 cut(s) 367, 394
HpaII CCGG 1 cut(s) 553
Hpy166II GTNNAC 7 cut(s) 22, 98, 209, 367, 394, 404, 601
Hpy188I TCNGA 6 cut(s) 187, 235, 289, 348, 415, 559
Hpy188III TCNNGA 3 cut(s) 436, 661, 691
Hpy8I GTNNAC 7 cut(s) 22, 98, 209, 367, 394, 404, 601
HpyAV CCTTC 6 cut(s) 15, 76, 343, 588, 643, 658
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 7 cut(s) 50, 146, 170, 227, 332, 518, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 4 cut(s) 25, 151, 315, 525
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 2 cut(s) 307, 664
KpnI GGTACC 2 cut(s) 356, 491
KspAI GTTAAC 2 cut(s) 367, 394
Kzo9I GATC 3 cut(s) 320, 432, 673
LmnI GCTCC 3 cut(s) 161, 268, 479
Lsp1109I GCAGC 3 cut(s) 158, 239, 706
LweI GCATC 4 cut(s) 157, 179, 319, 550
MaeI CTAG 3 cut(s) 194, 204, 240
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 634
MalI GATC 3 cut(s) 322, 434, 675
MboI GATC 3 cut(s) 320, 432, 673
MboII GAAGA 2 cut(s) 428, 693
MflI RGATCY 1 cut(s) 673
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 599, 649
MnlI CCTC 3 cut(s) 151, 635, 698
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 5 cut(s) 56, 222, 366, 393, 543
MslI CAYNNNNRTG 1 cut(s) 175
MspA1I CMGCKG 2 cut(s) 480, 719
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 1 cut(s) 553
MspR9I CCNGG 2 cut(s) 66, 267
MvaI CCWGG 2 cut(s) 66, 267
MwoI GCNNNNNNNGC 1 cut(s) 713
NdeII GATC 3 cut(s) 320, 432, 673
NlaIII CATG 2 cut(s) 307, 664
NlaIV GGNNCC 2 cut(s) 354, 489
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 307
PagI TCATGA 1 cut(s) 660
PceI AGGCCT 1 cut(s) 244
PfeI GAWTC 1 cut(s) 613
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 4 cut(s) 148, 229, 718, 721
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 64, 265
PspGI CCWGG 2 cut(s) 64, 265
PspN4I GGNNCC 2 cut(s) 354, 489
PspPI GGNCC 1 cut(s) 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 673
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 4 cut(s) 23, 97, 354, 489
RsaNI GTAC 4 cut(s) 22, 96, 353, 488
RseI CAYNNNNRTG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 207
SaqAI TTAA 5 cut(s) 56, 222, 366, 393, 543
SatI GCNGC 4 cut(s) 147, 228, 717, 720
Sau3AI GATC 3 cut(s) 320, 432, 673
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 66, 267
SfaNI GCATC 4 cut(s) 157, 179, 319, 550
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 3 cut(s) 91, 542, 689
SmoI CTYRAG 3 cut(s) 91, 542, 689
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 2 cut(s) 217, 478
SspMI CTAG 3 cut(s) 194, 204, 240
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 64, 265
TaiI ACGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 16, 173, 208
TatI WGTACW 2 cut(s) 21, 95
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 5 cut(s) 56, 222, 366, 393, 543
Tru9I TTAA 5 cut(s) 56, 222, 366, 393, 543
TscAI CASTG 1 cut(s) 330
TseI GCWGC 4 cut(s) 146, 227, 716, 719
TspDTI ATGAA 2 cut(s) 677, 726
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 208, 600
XspI CTAG 3 cut(s) 194, 204, 240
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.