Rh5CG168200

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001394
Physical Location & Seq
Reverse (-)
15713394 .. 15719137
5744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG168200.1

Sequence Viewer

Length: 459 bp
ATGTGGACATTTGGCGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCTTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAAGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACCAACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTAATGAAGCAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

152

Amino Acids

16.78

Weight (kDa)

9.45

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 333
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 217, 427
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 5 cut(s) 130, 181, 202, 239, 455
AluI AGCT 5 cut(s) 130, 181, 202, 239, 455
Alw26I GTCTC 3 cut(s) 105, 354, 436
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 343, 449, 452
Asp718I GGTACC 1 cut(s) 220
AspLEI GCGC 2 cut(s) 17, 121
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 421
BciVI GTATCC 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 105, 354, 436
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 93
BglII AGATCT 1 cut(s) 406
BisI GCNGC 3 cut(s) 344, 450, 453
BlsI GCNGC 3 cut(s) 345, 451, 454
BmiI GGNNCC 2 cut(s) 141, 222
BmsI GCATC 3 cut(s) 106, 283, 355
BpuEI CTTGAG 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 427
Bse1I ACTGG 3 cut(s) 117, 149, 247
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 81
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 217, 427
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 116, 249
BseNI ACTGG 3 cut(s) 117, 149, 247
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 217, 427
BsmAI GTCTC 3 cut(s) 105, 354, 436
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 107, 406
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 115, 250
BspLI GGNNCC 2 cut(s) 141, 222
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 3 cut(s) 117, 149, 247
BssMI GATC 2 cut(s) 107, 406
Bst6I CTCTTC 1 cut(s) 439
BstAFI CTTAAG 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 102, 258
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 121
BstKTI GATC 2 cut(s) 110, 409
BstMAI GTCTC 3 cut(s) 105, 354, 436
BstMBI GATC 2 cut(s) 107, 406
BstMWI GCNNNNNNNGC 2 cut(s) 127, 446
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 2 cut(s) 17, 121
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 31, 130, 181, 202, 239, 262, 455
CviKI_1 RGCY 7 cut(s) 31, 130, 181, 202, 239, 262, 455
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 102, 258
DpnI GATC 2 cut(s) 109, 408
DpnII GATC 2 cut(s) 107, 406
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 155
FaeI CATG 1 cut(s) 94
FaiI YATR 7 cut(s) 48, 80, 88, 92, 146, 205, 417
FatI CATG 1 cut(s) 90
FauI CCCGC 1 cut(s) 218
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 344, 450, 453
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 344, 450, 453
FspBI CTAG 1 cut(s) 27
GlaI GCGC 2 cut(s) 16, 120
GluI GCNGC 3 cut(s) 344, 450, 453
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 286
HhaI GCGC 2 cut(s) 17, 121
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 2 cut(s) 15, 119
HinP1I GCGC 2 cut(s) 15, 119
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 362
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 1 cut(s) 286
Hpy166II GTNNAC 3 cut(s) 6, 154, 334
Hpy188I TCNGA 4 cut(s) 22, 76, 135, 292
Hpy188III TCNNGA 2 cut(s) 394, 424
Hpy8I GTNNAC 3 cut(s) 6, 154, 334
HpyAV CCTTC 4 cut(s) 130, 321, 376, 391
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 251, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 446
HpyF3I CTNAG 2 cut(s) 102, 258
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 2 cut(s) 15, 119
KpnI GGTACC 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 107, 406
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 3 cut(s) 106, 283, 355
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 109, 408
MboI GATC 2 cut(s) 107, 406
MboII GAAGA 1 cut(s) 426
MflI RGATCY 1 cut(s) 406
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 332, 382
MnlI CCTC 2 cut(s) 368, 431
MseI TTAA 2 cut(s) 153, 276
MspA1I CMGCKG 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 127, 446
NdeII GATC 2 cut(s) 107, 406
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 141, 222
NspI RCATGY 1 cut(s) 94
PceI AGGCCT 1 cut(s) 31
PkrI GCNGC 3 cut(s) 345, 451, 454
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 141, 222
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 153, 276
SatI GCNGC 3 cut(s) 344, 450, 453
Sau3AI GATC 2 cut(s) 107, 406
SchI GAGTC 1 cut(s) 356
SfaNI GCATC 3 cut(s) 106, 283, 355
SfcI CTRYAG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 275, 422
SmoI CTYRAG 2 cut(s) 275, 422
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 27
StuI AGGCCT 1 cut(s) 31
TaiI ACGT 1 cut(s) 307
Tru1I TTAA 2 cut(s) 153, 276
Tru9I TTAA 2 cut(s) 153, 276
TscAI CASTG 1 cut(s) 117
TseI GCWGC 3 cut(s) 343, 449, 452
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 275
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.