Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003392.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

26904 .. 28706

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003392.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgccttcaacacatcgagtgtacttagaaccacctatcattcactttgcagtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctgtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggtgtttcagtatgggaatggtctggtgccgccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcgacttgtccgctttaatgcagcttcagaaactaggcctgtagaacctgaatatgctcctggacaccaaataatgttctccgatatgtatccatacatgctattgtctcagggatcactggatgcactaaatgagcttctgaaggaacccataccagttaaccgatttagacccaacattcttgttaacggatgtgaaccattttccgaagacctatggacagagatcaggatagagaagctaacatttcaaggtgtcaagctatgctcccgctgtaaggtacctacaatcaatcaagcaactggcattgcaggacctgagccaaacgacactcttaagaaaatccggtctgatgcagttttacgtccaacaggaaaacagcagggaagggtctacttcgggcagaatcttgtttggagagactctgttacaggaggtgtgaagggaaatgtcatgaaggttggggatcttgtttatgtcctcaagatggtctcttctgctgatgaagcagctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

271

Amino Acids

29.83

Weight (kDa)

5.53

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	2 cut(s)	233, 577
AccI	GTMKAC	2 cut(s)	298, 690
AciI	CCGC	3 cut(s)	237, 307, 568
AclWI	GGATC	2 cut(s)	418, 771
AcuI	CTGAAG	4 cut(s)	101, 191, 306, 458
AfaI	GTAC	4 cut(s)	23, 97, 187, 579
AfiI	CCNNNNNNNGG	2 cut(s)	574, 784
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	2 cut(s)	9, 548
AjnI	CCWGG	3 cut(s)	64, 154, 355
AluBI	AGCT	6 cut(s)	254, 320, 433, 538, 559, 809
AluI	AGCT	6 cut(s)	254, 320, 433, 538, 559, 809
Alw26I	GTCTC	3 cut(s)	408, 711, 793
AlwI	GGATC	2 cut(s)	418, 771
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	317, 806, 809
Asp718I	GGTACC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	233, 577
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	329, 796
BccI	CCATC	5 cut(s)	64, 110, 154, 200, 778
BciT130I	CCWGG	3 cut(s)	66, 156, 357
BciVI	GTATCC	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	408, 711, 793
BfaI	CTAG	3 cut(s)	284, 294, 330
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	4 cut(s)	237, 318, 807, 810
BlsI	GCNGC	4 cut(s)	238, 319, 808, 811
Bme1390I	CCNGG	3 cut(s)	66, 156, 357
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	3 cut(s)	235, 444, 579
BmrFI	CCNGG	3 cut(s)	66, 156, 357
BmsI	GCATC	4 cut(s)	247, 269, 409, 640
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	112, 202, 764
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	793
BsaJI	CCNNGG	2 cut(s)	65, 155
BsaWI	WCCGGW	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 784
Bse1I	ACTGG	3 cut(s)	420, 452, 604
Bse3DI	GCAATG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	3 cut(s)	66, 156, 357
BseDI	CCNNGG	2 cut(s)	65, 155
BseGI	GGATG	6 cut(s)	75, 79, 165, 169, 424, 494
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	574, 784
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	419, 606
BseNI	ACTGG	3 cut(s)	420, 452, 604
BseXI	GCAGC	2 cut(s)	329, 796
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	2 cut(s)	233, 577
BsiSI	CCGG	1 cut(s)	643
BslI	CCNNNNNNNGG	2 cut(s)	574, 784
BsmAI	GTCTC	3 cut(s)	408, 711, 793
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	793
Bsp143I	GATC	3 cut(s)	410, 522, 763
BspACI	CCGC	3 cut(s)	237, 307, 568
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	418, 607
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	3 cut(s)	235, 444, 579
BspPI	GGATC	2 cut(s)	418, 771
BspT107I	GGYRCC	2 cut(s)	233, 577
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	420, 452, 604
BssECI	CCNNGG	2 cut(s)	65, 155
BssMI	GATC	3 cut(s)	410, 522, 763
Bst2UI	CCWGG	3 cut(s)	66, 156, 357
Bst6I	CTCTTC	1 cut(s)	796
BstAFI	CTTAAG	1 cut(s)	632
BstDEI	CTNAG	4 cut(s)	25, 241, 405, 615
BstF5I	GGATG	6 cut(s)	75, 79, 165, 169, 424, 494
BstKTI	GATC	3 cut(s)	413, 525, 766
BstMAI	GTCTC	3 cut(s)	408, 711, 793
BstMBI	GATC	3 cut(s)	410, 522, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	3 cut(s)	66, 156, 357
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	64, 154, 355
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	329, 796
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	75, 79, 165, 169, 424, 494
BtsIMutI	CAGTG	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	4 cut(s)	22, 96, 186, 578
CviAII	CATG	2 cut(s)	394, 751
CviJI	RGCY	8 cut(s)	254, 320, 334, 433, 538, 559, 619, 809
CviKI_1	RGCY	8 cut(s)	254, 320, 334, 433, 538, 559, 619, 809
CviQI	GTAC	4 cut(s)	22, 96, 186, 578
DdeI	CTNAG	4 cut(s)	25, 241, 405, 615
DpnI	GATC	3 cut(s)	412, 524, 765
DpnII	GATC	3 cut(s)	410, 522, 763
Eam1104I	CTCTTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	796
Eco147I	AGGCCT	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	4 cut(s)	101, 191, 306, 458
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	3 cut(s)	64, 154, 355
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	397, 754
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 164, 196
FatI	CATG	2 cut(s)	393, 750
FauI	CCCGC	1 cut(s)	575
FblI	GTMKAC	2 cut(s)	298, 690
Fnu4HI	GCNGC	4 cut(s)	237, 318, 807, 810
FokI	GGATG	6 cut(s)	82, 86, 172, 176, 431, 501
Fsp4HI	GCNGC	4 cut(s)	237, 318, 807, 810
FspBI	CTAG	3 cut(s)	284, 294, 330
GluI	GCNGC	4 cut(s)	237, 318, 807, 810
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	643
Hin1II	CATG	2 cut(s)	397, 754
HincII	GTYRAC	3 cut(s)	299, 457, 484
HindII	GTYRAC	3 cut(s)	299, 457, 484
HinfI	GANTC	2 cut(s)	703, 719
HpaI	GTTAAC	2 cut(s)	457, 484
HpaII	CCGG	1 cut(s)	643
Hpy166II	GTNNAC	8 cut(s)	22, 98, 188, 299, 457, 484, 494, 691
Hpy188I	TCNGA	6 cut(s)	277, 325, 379, 438, 505, 649
Hpy188III	TCNNGA	3 cut(s)	526, 751, 781
Hpy8I	GTNNAC	8 cut(s)	22, 98, 188, 299, 457, 484, 494, 691
HpyAV	CCTTC	7 cut(s)	15, 76, 166, 433, 678, 733, 748
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	6 cut(s)	50, 260, 317, 422, 608, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	4 cut(s)	25, 241, 405, 615
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	2 cut(s)	397, 754
KpnI	GGTACC	1 cut(s)	581
KspAI	GTTAAC	2 cut(s)	457, 484
Kzo9I	GATC	3 cut(s)	410, 522, 763
LmnI	GCTCC	3 cut(s)	251, 358, 569
Lsp1109I	GCAGC	2 cut(s)	329, 796
LweI	GCATC	4 cut(s)	247, 269, 409, 640
MaeI	CTAG	3 cut(s)	284, 294, 330
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	3 cut(s)	412, 524, 765
MboI	GATC	3 cut(s)	410, 522, 763
MboII	GAAGA	2 cut(s)	518, 783
MflI	RGATCY	1 cut(s)	763
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	3 cut(s)	241, 725, 788
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	6 cut(s)	56, 146, 312, 456, 483, 633
MslI	CAYNNNNRTG	1 cut(s)	265
MspA1I	CMGCKG	2 cut(s)	570, 809
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	3 cut(s)	66, 156, 357
MvaI	CCWGG	3 cut(s)	66, 156, 357
MwoI	GCNNNNNNNGC	1 cut(s)	803
NdeII	GATC	3 cut(s)	410, 522, 763
NlaIII	CATG	2 cut(s)	397, 754
NlaIV	GGNNCC	3 cut(s)	235, 444, 579
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	238, 319, 808, 811
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	3 cut(s)	64, 154, 355
PspGI	CCWGG	3 cut(s)	64, 154, 355
PspN4I	GGNNCC	3 cut(s)	235, 444, 579
PspPI	GGNCC	1 cut(s)	611
PspPPI	RGGWCCY	1 cut(s)	611
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	4 cut(s)	23, 97, 187, 579
RsaNI	GTAC	4 cut(s)	22, 96, 186, 578
RseI	CAYNNNNRTG	1 cut(s)	265
SalI	GTCGAC	1 cut(s)	297
SaqAI	TTAA	6 cut(s)	56, 146, 312, 456, 483, 633
SatI	GCNGC	4 cut(s)	237, 318, 807, 810
Sau3AI	GATC	3 cut(s)	410, 522, 763
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	3 cut(s)	66, 156, 357
SfaNI	GCATC	4 cut(s)	247, 269, 409, 640
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	4 cut(s)	91, 181, 632, 779
SmoI	CTYRAG	4 cut(s)	91, 181, 632, 779
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	3 cut(s)	237, 307, 568
SspMI	CTAG	3 cut(s)	284, 294, 330
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	64, 154, 355
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	16, 263, 298
TatI	WGTACW	3 cut(s)	21, 95, 185
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	6 cut(s)	56, 146, 312, 456, 483, 633
Tru9I	TTAA	6 cut(s)	56, 146, 312, 456, 483, 633
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	3 cut(s)	317, 806, 809
TspDTI	ATGAA	2 cut(s)	767, 816
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	611
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	298, 690
XspI	CTAG	3 cut(s)	284, 294, 330
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.