RchiOBHm_Chr4g0419251

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001394
Physical Location & Seq
Forward (+)
44715734 .. 44719573
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38916

Sequence Viewer

Length: 1065 bp
ATGAGCCTGTTAATTACCACACGTGGTAGGCTTCAGACGTCCACATTTGGGTTTAATGAACATTTCGAAATACCGGGTTGTGTCCTCTCTTCCTTTGAGCAATTACACCACACTGCCATCAAACCCTTCTCTTCCTCTAAACCAAACCAGAACAAGACGGAAGAGAAACTGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTGAAGCTCCTGTTACTCCTACTGTAAACTACAAAGGGAGGGTATATACTCAAAGAGTTGGGCCAAAGCTTGCTTTGGTTGAGGTACAACTGCCAAATGAGGCATTCCTAGAGAATTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGAGTATCTAGGGAAACCTAGTCGACTTGTCTGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCTTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACAAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGATATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACCGACACTCTTAAGAAAATCCGGTCTGATGTAATTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGCTTCAGCAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

354

Amino Acids

39.04

Weight (kDa)

8.11

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 65 - 181 6.4e-22 MOSC N-terminal beta barrel domain
MOSC PF03473 204 - 340 1.1e-21 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
Acc65I GGTACC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 826
AccI GTMKAC 2 cut(s) 547, 939
AciI CCGC 1 cut(s) 817
AclWI GGATC 1 cut(s) 667
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 6 cut(s) 17, 270, 440, 555, 707, 1035
AcvI CACGTG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 3 cut(s) 333, 436, 828
AfiI CCNNNNNNNGG 3 cut(s) 48, 823, 1033
AflII CTTAAG 1 cut(s) 881
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 1 cut(s) 797
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
Alw26I GTCTC 3 cut(s) 657, 960, 1042
AlwI GGATC 1 cut(s) 667
AlwNI CAGNNNCTG 2 cut(s) 248, 863
AoxI GGCC 2 cut(s) 308, 581
ApeKI GCWGC 6 cut(s) 485, 566, 949, 1046, 1055, 1058
ApoI RAATTY 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 826
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 826
BbrPI CACGTG 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 472, 578, 961, 1033
BccI CCATC 4 cut(s) 125, 403, 449, 1027
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 645
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 657, 960, 1042
BfaI CTAG 5 cut(s) 356, 389, 533, 543, 579
BfmI CTRYAG 1 cut(s) 585
BfrI CTTAAG 1 cut(s) 881
BfuI GTATCC 1 cut(s) 645
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 6 cut(s) 486, 567, 950, 1047, 1056, 1059
BlsI GCNGC 6 cut(s) 487, 568, 951, 1048, 1057, 1060
Bme1390I CCNGG 2 cut(s) 75, 405
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 3 cut(s) 369, 693, 828
BmrFI CCNGG 2 cut(s) 75, 405
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 5 cut(s) 209, 496, 518, 658, 961
BmuI ACTGGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 2 cut(s) 451, 1013
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 1042
BsaJI CCNNGG 2 cut(s) 232, 404
BsaWI WCCGGW 1 cut(s) 891
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 823, 1033
Bse1I ACTGG 4 cut(s) 174, 218, 669, 853
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 232, 404
BseGI GGATG 4 cut(s) 414, 418, 673, 743
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 3 cut(s) 48, 823, 1033
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 668, 855
BseNI ACTGG 4 cut(s) 174, 218, 669, 853
BseXI GCAGC 4 cut(s) 472, 578, 961, 1033
BshFI GGCC 2 cut(s) 310, 583
BshNI GGYRCC 1 cut(s) 826
BsiSI CCGG 2 cut(s) 74, 892
BslI CCNNNNNNNGG 3 cut(s) 48, 823, 1033
BsmAI GTCTC 3 cut(s) 657, 960, 1042
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 310, 583
Bso31I GGTCTC 1 cut(s) 1042
Bsp119I TTCGAA 1 cut(s) 66
Bsp143I GATC 2 cut(s) 659, 1012
BspACI CCGC 1 cut(s) 817
BspANI GGCC 2 cut(s) 310, 583
BspCNI CTCAG 2 cut(s) 667, 856
BspLI GGNNCC 3 cut(s) 369, 693, 828
BspPI GGATC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 826
BspTI CTTAAG 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 1042
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 4 cut(s) 174, 218, 669, 853
BssECI CCNNGG 2 cut(s) 232, 404
BssMI GATC 2 cut(s) 659, 1012
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 4 cut(s) 94, 136, 156, 1045
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 881
BstBAI YACGTR 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 490, 654, 864
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 414, 418, 673, 743
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 2 cut(s) 662, 1015
BstMAI GTCTC 3 cut(s) 657, 960, 1042
BstMBI GATC 2 cut(s) 659, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 679, 1052, 1055
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 2 cut(s) 73, 403
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 4 cut(s) 472, 578, 961, 1033
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BsuI GTATCC 1 cut(s) 645
BsuRI GGCC 2 cut(s) 310, 583
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 414, 418, 673, 743
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 662
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 2 cut(s) 248, 863
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 332, 435, 827
CviAII CATG 2 cut(s) 228, 643
CviQI GTAC 3 cut(s) 332, 435, 827
DdeI CTNAG 3 cut(s) 490, 654, 864
DpnI GATC 2 cut(s) 661, 1014
DpnII GATC 2 cut(s) 659, 1012
Eam1104I CTCTTC 4 cut(s) 94, 136, 156, 1045
EarI CTCTTC 4 cut(s) 94, 136, 156, 1045
Eco147I AGGCCT 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 1042
Eco32I GATATC 1 cut(s) 772
Eco57I CTGAAG 6 cut(s) 17, 270, 440, 555, 707, 1035
Eco72I CACGTG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 511
FaeI CATG 2 cut(s) 231, 646
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 2 cut(s) 227, 642
FauI CCCGC 1 cut(s) 824
FblI GTMKAC 2 cut(s) 547, 939
Fnu4HI GCNGC 6 cut(s) 486, 567, 950, 1047, 1056, 1059
FokI GGATG 4 cut(s) 421, 425, 680, 750
Fsp4HI GCNGC 6 cut(s) 486, 567, 950, 1047, 1056, 1059
FspBI CTAG 5 cut(s) 356, 389, 533, 543, 579
GlaI GCGC 1 cut(s) 672
GluI GCNGC 6 cut(s) 486, 567, 950, 1047, 1056, 1059
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 310, 583
HapII CCGG 2 cut(s) 74, 892
HhaI GCGC 1 cut(s) 673
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 231, 646
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HincII GTYRAC 3 cut(s) 548, 706, 733
HindII GTYRAC 3 cut(s) 548, 706, 733
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 968
HpaI GTTAAC 2 cut(s) 706, 733
HpaII CCGG 2 cut(s) 74, 892
Hpy166II GTNNAC 8 cut(s) 42, 274, 437, 548, 706, 733, 743, 940
Hpy188I TCNGA 9 cut(s) 36, 187, 250, 526, 574, 628, 687, 754, 898
Hpy188III TCNNGA 3 cut(s) 775, 1000, 1030
Hpy8I GTNNAC 8 cut(s) 42, 274, 437, 548, 706, 733, 743, 940
HpyAV CCTTC 7 cut(s) 136, 169, 415, 682, 927, 982, 997
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 3 cut(s) 22, 38, 910
HpyCH4V TGCA 5 cut(s) 200, 509, 566, 857, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 679, 1052, 1055
HpyF3I CTNAG 3 cut(s) 490, 654, 864
HpySE526I ACGT 3 cut(s) 22, 38, 910
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 231, 646
HspAI GCGC 1 cut(s) 671
KpnI GGTACC 1 cut(s) 830
KspAI GTTAAC 2 cut(s) 706, 733
Kzo9I GATC 2 cut(s) 659, 1012
LmnI GCTCC 3 cut(s) 259, 500, 818
Lsp1109I GCAGC 4 cut(s) 472, 578, 961, 1033
LweI GCATC 5 cut(s) 209, 496, 518, 658, 961
MaeI CTAG 5 cut(s) 356, 389, 533, 543, 579
MaeII ACGT 3 cut(s) 22, 38, 910
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 661, 1014
MboI GATC 2 cut(s) 659, 1012
MboII GAAGA 6 cut(s) 81, 123, 173, 199, 767, 1032
MflI RGATCY 1 cut(s) 1012
MluCI AATT 5 cut(s) 12, 101, 237, 361, 903
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 2 cut(s) 938, 988
MnlI CCTC 8 cut(s) 95, 145, 279, 322, 340, 490, 974, 1037
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 7 cut(s) 11, 54, 395, 561, 705, 732, 882
MslI CAYNNNNRTG 1 cut(s) 514
MspA1I CMGCKG 1 cut(s) 819
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 2 cut(s) 74, 892
MspR9I CCNGG 2 cut(s) 75, 405
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 679, 1052, 1055
NciI CCSGG 1 cut(s) 75
NdeII GATC 2 cut(s) 659, 1012
NlaIII CATG 2 cut(s) 231, 646
NlaIV GGNNCC 3 cut(s) 369, 693, 828
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 646
NspV TTCGAA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 583
PctI GAATGC 1 cut(s) 350
PkrI GCNGC 6 cut(s) 487, 568, 951, 1048, 1057, 1060
PleI GAGTC 1 cut(s) 962
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 1 cut(s) 962
Ppu21I YACGTR 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 403
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 369, 693, 828
PspPI GGNCC 1 cut(s) 308
PstNI CAGNNNCTG 2 cut(s) 248, 863
PsuI RGATCY 1 cut(s) 1012
RsaI GTAC 3 cut(s) 333, 436, 828
RsaNI GTAC 3 cut(s) 332, 435, 827
RseI CAYNNNNRTG 1 cut(s) 514
SalI GTCGAC 1 cut(s) 546
SaqAI TTAA 7 cut(s) 11, 54, 395, 561, 705, 732, 882
SatI GCNGC 6 cut(s) 486, 567, 950, 1047, 1056, 1059
Sau3AI GATC 2 cut(s) 659, 1012
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 2 cut(s) 75, 405
SfaNI GCATC 5 cut(s) 209, 496, 518, 658, 961
SfcI CTRYAG 1 cut(s) 585
SfuI TTCGAA 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 514
SmlI CTYRAG 3 cut(s) 430, 881, 1028
SmoI CTYRAG 3 cut(s) 430, 881, 1028
Sse9I AATT 5 cut(s) 12, 101, 237, 361, 903
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 1 cut(s) 817
SspMI CTAG 5 cut(s) 356, 389, 533, 543, 579
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 73, 403
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 3 cut(s) 25, 41, 913
TaqI TCGA 3 cut(s) 66, 512, 547
TasI AATT 5 cut(s) 12, 101, 237, 361, 903
TatI WGTACW 1 cut(s) 434
Tru1I TTAA 7 cut(s) 11, 54, 395, 561, 705, 732, 882
Tru9I TTAA 7 cut(s) 11, 54, 395, 561, 705, 732, 882
TscAI CASTG 2 cut(s) 118, 669
TseI GCWGC 6 cut(s) 485, 566, 949, 1046, 1055, 1058
TspDTI ATGAA 2 cut(s) 72, 199
TspGWI ACGGA 2 cut(s) 173, 750
TspRI CASTG 2 cut(s) 118, 669
Vha464I CTTAAG 1 cut(s) 881
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 547, 939
XspI CTAG 5 cut(s) 356, 389, 533, 543, 579
ZraI GACGTC 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.