RchiOBHm_Chr5g0021291

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001394
Physical Location & Seq
Reverse (-)
15535180 .. 15545199
10020 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30135

Sequence Viewer

Length: 873 bp
ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCTCATGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGGTTAGTAGTAAACTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAGCTGCCAAATGAGGCATTCCTAGAGAACTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCAACTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCTTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAAGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACCAACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTATAGGAGATGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTCTGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

290

Amino Acids

32.16

Weight (kDa)

8.97

Isoelectric Point (pI)

25.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 9 - 135 1.3e-35 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 2 cut(s) 409, 747
AciI CCGC 2 cut(s) 418, 625
AclWI GGATC 2 cut(s) 123, 529
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 3 cut(s) 302, 417, 569
AfaI GTAC 3 cut(s) 195, 298, 636
AfiI CCNNNNNNNGG 2 cut(s) 631, 841
AflII CTTAAG 1 cut(s) 689
AgsI TTSAA 1 cut(s) 605
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
Alw26I GTCTC 3 cut(s) 519, 768, 850
AlwI GGATC 2 cut(s) 123, 529
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 4 cut(s) 199, 347, 428, 863
ApoI RAATTY 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 535
BanI GGYRCC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 186, 334, 440
BccI CCATC 3 cut(s) 265, 311, 835
BceAI ACGGC 1 cut(s) 48
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 519, 768, 850
BfaI CTAG 5 cut(s) 218, 251, 395, 405, 441
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 689
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 1 cut(s) 820
BisI GCNGC 4 cut(s) 200, 348, 429, 864
BlsI GCNGC 4 cut(s) 201, 349, 430, 865
BmiI GGNNCC 3 cut(s) 231, 555, 636
BmrI ACTGGG 3 cut(s) 44, 235, 276
BmsI GCATC 5 cut(s) 41, 358, 380, 520, 697
BmuI ACTGGG 3 cut(s) 44, 235, 276
BpuEI CTTGAG 3 cut(s) 66, 313, 821
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 699
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 841
Bse1I ACTGG 7 cut(s) 50, 106, 230, 271, 531, 563, 661
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 3 cut(s) 276, 280, 535
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 631, 841
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 530, 663
BseNI ACTGG 7 cut(s) 50, 106, 230, 271, 531, 563, 661
BseXI GCAGC 3 cut(s) 186, 334, 440
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 2 cut(s) 631, 841
BsmAI GTCTC 3 cut(s) 519, 768, 850
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 850
Bsp143I GATC 3 cut(s) 115, 521, 820
BspACI CCGC 2 cut(s) 418, 625
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 529, 664
BspLI GGNNCC 3 cut(s) 231, 555, 636
BspPI GGATC 2 cut(s) 123, 529
BspT107I GGYRCC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 689
BspTNI GGTCTC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 7 cut(s) 50, 106, 230, 271, 531, 563, 661
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 3 cut(s) 115, 521, 820
Bst6I CTCTTC 1 cut(s) 853
BstAFI CTTAAG 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 352, 516, 672
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 3 cut(s) 276, 280, 535
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 3 cut(s) 118, 524, 823
BstMAI GTCTC 3 cut(s) 519, 768, 850
BstMBI GATC 3 cut(s) 115, 521, 820
BstMWI GCNNNNNNNGC 2 cut(s) 541, 860
BstNSI RCATGY 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 3 cut(s) 186, 334, 440
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 276, 280, 535
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 194, 297, 635
CviAII CATG 3 cut(s) 60, 89, 505
CviQI GTAC 3 cut(s) 194, 297, 635
DdeI CTNAG 3 cut(s) 352, 516, 672
DpnI GATC 3 cut(s) 117, 523, 822
DpnII GATC 3 cut(s) 115, 521, 820
Eam1104I CTCTTC 1 cut(s) 853
EarI CTCTTC 1 cut(s) 853
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 850
Eco57I CTGAAG 3 cut(s) 302, 417, 569
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 3 cut(s) 63, 92, 508
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 3 cut(s) 59, 88, 504
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 2 cut(s) 409, 747
Fnu4HI GCNGC 4 cut(s) 200, 348, 429, 864
FokI GGATG 3 cut(s) 283, 287, 542
Fsp4HI GCNGC 4 cut(s) 200, 348, 429, 864
FspBI CTAG 5 cut(s) 218, 251, 395, 405, 441
GlaI GCGC 1 cut(s) 534
GluI GCNGC 4 cut(s) 200, 348, 429, 864
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 700
HhaI GCGC 1 cut(s) 535
Hin1II CATG 3 cut(s) 63, 92, 508
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HincII GTYRAC 2 cut(s) 410, 568
HindII GTYRAC 2 cut(s) 410, 568
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 760, 776
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 1 cut(s) 700
Hpy166II GTNNAC 5 cut(s) 136, 299, 410, 568, 748
Hpy188I TCNGA 6 cut(s) 19, 388, 436, 490, 549, 706
Hpy188III TCNNGA 2 cut(s) 808, 838
Hpy8I GTNNAC 5 cut(s) 136, 299, 410, 568, 748
HpyAV CCTTC 5 cut(s) 277, 544, 735, 790, 805
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 5 cut(s) 32, 371, 428, 665, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 860
HpyF3I CTNAG 3 cut(s) 352, 516, 672
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 3 cut(s) 63, 92, 508
HspAI GCGC 1 cut(s) 533
KpnI GGTACC 1 cut(s) 638
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 3 cut(s) 115, 521, 820
LmnI GCTCC 2 cut(s) 362, 626
Lsp1109I GCAGC 3 cut(s) 186, 334, 440
LweI GCATC 5 cut(s) 41, 358, 380, 520, 697
MaeI CTAG 5 cut(s) 218, 251, 395, 405, 441
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 117, 523, 822
MboI GATC 3 cut(s) 115, 521, 820
MboII GAAGA 2 cut(s) 31, 840
MflI RGATCY 1 cut(s) 820
MluCI AATT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 2 cut(s) 746, 796
MnlI CCTC 5 cut(s) 141, 184, 202, 352, 845
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 4 cut(s) 257, 423, 567, 690
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 2 cut(s) 199, 627
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 1 cut(s) 700
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 541, 860
NdeII GATC 3 cut(s) 115, 521, 820
NlaIII CATG 3 cut(s) 63, 92, 508
NlaIV GGNNCC 3 cut(s) 231, 555, 636
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 508
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 760
PkrI GCNGC 4 cut(s) 201, 349, 430, 865
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PspN4I GGNNCC 3 cut(s) 231, 555, 636
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 3 cut(s) 195, 298, 636
RsaNI GTAC 3 cut(s) 194, 297, 635
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 408
SaqAI TTAA 4 cut(s) 257, 423, 567, 690
SatI GCNGC 4 cut(s) 200, 348, 429, 864
Sau3AI GATC 3 cut(s) 115, 521, 820
SchI GAGTC 1 cut(s) 770
SfaNI GCATC 5 cut(s) 41, 358, 380, 520, 697
SfcI CTRYAG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 4 cut(s) 81, 292, 689, 836
SmoI CTYRAG 4 cut(s) 81, 292, 689, 836
Sse9I AATT 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 418, 625
SspMI CTAG 5 cut(s) 218, 251, 395, 405, 441
StuI AGGCCT 1 cut(s) 445
TaiI ACGT 1 cut(s) 721
TaqI TCGA 3 cut(s) 118, 374, 409
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 4 cut(s) 257, 423, 567, 690
Tru9I TTAA 4 cut(s) 257, 423, 567, 690
TscAI CASTG 1 cut(s) 531
TseI GCWGC 4 cut(s) 199, 347, 428, 863
TspDTI ATGAA 2 cut(s) 31, 873
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 689
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 409, 747
XspI CTAG 5 cut(s) 218, 251, 395, 405, 441
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.