Rroxscaffold_2G00133180

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001394
Physical Location & Seq
Reverse (-)
70293716 .. 70296821
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133180.1

Sequence Viewer

Length: 516 bp
ATGTTCCATTATAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCAGACATGCTATTGTCTCAGGGATCACTGGATGCACTAAATGAGCTTTTGAAGGAACCCATACAAGTTAACCGATTTACACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGATATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAATTGATACAACCGACACTCTTAAGAAAATCCAGTCTGATGCAATTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTTGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

171

Amino Acids

18.86

Weight (kDa)

5.57

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 21 - 157 4.8e-18 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 390
AciI CCGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 6
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 274, 484
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 139, 248
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 6 cut(s) 20, 133, 238, 259, 296, 512
AluI AGCT 6 cut(s) 20, 133, 238, 259, 296, 512
Alw26I GTCTC 3 cut(s) 108, 411, 493
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 4 cut(s) 17, 400, 506, 509
Asp718I GGTACC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 29, 412
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 108, 411, 493
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 332
BfuI GTATCC 1 cut(s) 96
BglII AGATCT 1 cut(s) 463
BisI GCNGC 4 cut(s) 18, 401, 507, 510
BlsI GCNGC 4 cut(s) 19, 402, 508, 511
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 144, 279
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 3 cut(s) 109, 340, 412
BpiI GAAGAC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 484
Bse1I ACTGG 3 cut(s) 120, 304, 343
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 124, 194
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 274, 484
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 120, 304, 343
BseXI GCAGC 2 cut(s) 29, 412
BshFI GGCC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 274, 484
BsmAI GTCTC 3 cut(s) 108, 411, 493
BsnI GGCC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 110, 463
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 144, 279
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 3 cut(s) 120, 304, 343
BssMI GATC 2 cut(s) 110, 463
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 124, 194
BstKTI GATC 2 cut(s) 113, 466
BstMAI GTCTC 3 cut(s) 108, 411, 493
BstMBI GATC 2 cut(s) 110, 463
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 29, 412
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 2 cut(s) 124, 194
BtsIMutI CAGTG 1 cut(s) 113
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 20, 34, 133, 238, 259, 296, 512
CviKI_1 RGCY 7 cut(s) 20, 34, 133, 238, 259, 296, 512
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 112, 465
DpnII GATC 2 cut(s) 110, 463
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 493
Eco32I GATATC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 223
FaeI CATG 1 cut(s) 97
FaiI YATR 8 cut(s) 12, 51, 83, 95, 149, 214, 262, 474
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 275
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 18, 401, 507, 510
FokI GGATG 2 cut(s) 131, 201
Fsp4HI GCNGC 4 cut(s) 18, 401, 507, 510
FspBI CTAG 1 cut(s) 30
GluI GCNGC 4 cut(s) 18, 401, 507, 510
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 1 cut(s) 97
HincII GTYRAC 2 cut(s) 157, 184
HindII GTYRAC 2 cut(s) 157, 184
HinfI GANTC 1 cut(s) 419
HpaI GTTAAC 2 cut(s) 157, 184
Hpy166II GTNNAC 4 cut(s) 157, 184, 194, 391
Hpy188I TCNGA 4 cut(s) 25, 79, 205, 349
Hpy188III TCNNGA 3 cut(s) 89, 226, 481
Hpy8I GTNNAC 4 cut(s) 157, 184, 194, 391
HpyAV CCTTC 4 cut(s) 133, 378, 433, 448
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 5 cut(s) 17, 122, 308, 353, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 1 cut(s) 97
KpnI GGTACC 1 cut(s) 281
KspAI GTTAAC 2 cut(s) 157, 184
Kzo9I GATC 2 cut(s) 110, 463
LmnI GCTCC 2 cut(s) 58, 269
Lsp1109I GCAGC 2 cut(s) 29, 412
LweI GCATC 3 cut(s) 109, 340, 412
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 361
MalI GATC 2 cut(s) 112, 465
MboI GATC 2 cut(s) 110, 463
MboII GAAGA 2 cut(s) 218, 483
MflI RGATCY 1 cut(s) 463
MluCI AATT 2 cut(s) 312, 354
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 2 cut(s) 389, 439
MnlI CCTC 2 cut(s) 425, 488
MseI TTAA 3 cut(s) 156, 183, 333
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 503
NdeII GATC 2 cut(s) 110, 463
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 144, 279
NspI RCATGY 1 cut(s) 97
PceI AGGCCT 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 4 cut(s) 19, 402, 508, 511
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PsiI TTATAA 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 144, 279
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 3 cut(s) 156, 183, 333
SatI GCNGC 4 cut(s) 18, 401, 507, 510
Sau3AI GATC 2 cut(s) 110, 463
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 57
SfaNI GCATC 3 cut(s) 109, 340, 412
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 332, 479
SmoI CTYRAG 2 cut(s) 332, 479
Sse9I AATT 2 cut(s) 312, 354
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 364
TasI AATT 2 cut(s) 312, 354
Tru1I TTAA 3 cut(s) 156, 183, 333
Tru9I TTAA 3 cut(s) 156, 183, 333
TscAI CASTG 1 cut(s) 120
TseI GCWGC 4 cut(s) 17, 400, 506, 509
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 120
Vha464I CTTAAG 1 cut(s) 332
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.