Rh5CG168300

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001394
Physical Location & Seq
Reverse (-)
15719847 .. 15721779
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG168300.1

Sequence Viewer

Length: 657 bp
ATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCAGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGAACCTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCACTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGAGATCAGGATAGAGAAGTTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCGACTGGCATTGCAGGACCTGAGCCAAACGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCATGAAGGTTGGAGATATTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

5.35

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC PF03473 68 - 204 1.4e-21 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 2 cut(s) 139, 531
AciI CCGC 2 cut(s) 148, 409
AclWI GGATC 1 cut(s) 259
AcuI CTGAAG 3 cut(s) 32, 147, 299
AfaI GTAC 2 cut(s) 28, 420
AfiI CCNNNNNNNGG 2 cut(s) 415, 625
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 1 cut(s) 389
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 5 cut(s) 95, 161, 274, 400, 647
AluI AGCT 5 cut(s) 95, 161, 274, 400, 647
Alw26I GTCTC 3 cut(s) 249, 552, 634
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 4 cut(s) 77, 158, 647, 650
Asp718I GGTACC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 452
AvaII GGWCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 4 cut(s) 89, 170, 634, 637
BccI CCATC 2 cut(s) 41, 619
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 237
BcoDI GTCTC 3 cut(s) 249, 552, 634
BfaI CTAG 3 cut(s) 125, 135, 171
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 4 cut(s) 78, 159, 648, 651
BlsI GCNGC 4 cut(s) 79, 160, 649, 652
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 285, 420
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 4 cut(s) 88, 110, 250, 481
BpiI GAAGAC 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 43, 605
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 625
Bse1I ACTGG 3 cut(s) 261, 293, 445
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 3 cut(s) 10, 265, 335
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 415, 625
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 260, 447
BseNI ACTGG 3 cut(s) 261, 293, 445
BseXI GCAGC 4 cut(s) 89, 170, 634, 637
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 415, 625
BsmAI GTCTC 3 cut(s) 249, 552, 634
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 634
Bsp143I GATC 2 cut(s) 251, 363
BspACI CCGC 2 cut(s) 148, 409
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 259, 448
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 285, 420
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 3 cut(s) 261, 293, 445
BssMI GATC 2 cut(s) 251, 363
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 637
BstAFI CTTAAG 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 82, 246, 456
BstF5I GGATG 3 cut(s) 10, 265, 335
BstKTI GATC 2 cut(s) 254, 366
BstMAI GTCTC 3 cut(s) 249, 552, 634
BstMBI GATC 2 cut(s) 251, 363
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 89, 170, 634, 637
BstV2I GAAGAC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 10, 265, 335
BtsIMutI CAGTG 1 cut(s) 254
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 27, 419
CviAII CATG 2 cut(s) 235, 592
CviJI RGCY 8 cut(s) 80, 95, 161, 175, 274, 400, 460, 647
CviKI_1 RGCY 8 cut(s) 80, 95, 161, 175, 274, 400, 460, 647
CviQI GTAC 2 cut(s) 27, 419
DdeI CTNAG 3 cut(s) 82, 246, 456
DpnI GATC 2 cut(s) 253, 365
DpnII GATC 2 cut(s) 251, 363
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 3 cut(s) 32, 147, 299
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 2 cut(s) 238, 595
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 234, 591
FauI CCCGC 1 cut(s) 416
FblI GTMKAC 2 cut(s) 139, 531
Fnu4HI GCNGC 4 cut(s) 78, 159, 648, 651
FokI GGATG 3 cut(s) 17, 272, 342
Fsp4HI GCNGC 4 cut(s) 78, 159, 648, 651
FspBI CTAG 3 cut(s) 125, 135, 171
GluI GCNGC 4 cut(s) 78, 159, 648, 651
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 484
Hin1II CATG 2 cut(s) 238, 595
HincII GTYRAC 4 cut(s) 140, 298, 325, 381
HindII GTYRAC 4 cut(s) 140, 298, 325, 381
HinfI GANTC 2 cut(s) 544, 560
HpaI GTTAAC 3 cut(s) 298, 325, 381
HpaII CCGG 1 cut(s) 484
Hpy166II GTNNAC 7 cut(s) 29, 140, 298, 325, 335, 381, 532
Hpy188I TCNGA 6 cut(s) 118, 166, 220, 279, 346, 490
Hpy188III TCNNGA 3 cut(s) 367, 592, 622
Hpy8I GTNNAC 7 cut(s) 29, 140, 298, 325, 335, 381, 532
HpyAV CCTTC 5 cut(s) 7, 274, 519, 574, 589
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 6 cut(s) 77, 101, 158, 263, 449, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 3 cut(s) 82, 246, 456
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 2 cut(s) 238, 595
KpnI GGTACC 1 cut(s) 422
KspAI GTTAAC 3 cut(s) 298, 325, 381
Kzo9I GATC 2 cut(s) 251, 363
LmnI GCTCC 3 cut(s) 92, 199, 410
Lsp1109I GCAGC 4 cut(s) 89, 170, 634, 637
LweI GCATC 4 cut(s) 88, 110, 250, 481
MaeI CTAG 3 cut(s) 125, 135, 171
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 565
MalI GATC 2 cut(s) 253, 365
MboI GATC 2 cut(s) 251, 363
MboII GAAGA 2 cut(s) 359, 624
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 530, 580
MnlI CCTC 3 cut(s) 82, 566, 629
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 5 cut(s) 153, 297, 324, 380, 474
MslI CAYNNNNRTG 1 cut(s) 106
MspA1I CMGCKG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 2 cut(s) 251, 363
NlaIII CATG 2 cut(s) 238, 595
NlaIV GGNNCC 2 cut(s) 285, 420
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 591
PceI AGGCCT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 4 cut(s) 79, 160, 649, 652
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 285, 420
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 28, 420
RsaNI GTAC 2 cut(s) 27, 419
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 5 cut(s) 153, 297, 324, 380, 474
SatI GCNGC 4 cut(s) 78, 159, 648, 651
Sau3AI GATC 2 cut(s) 251, 363
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 198
SfaNI GCATC 4 cut(s) 88, 110, 250, 481
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 22, 473, 620
SmoI CTYRAG 3 cut(s) 22, 473, 620
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 2 cut(s) 148, 409
SspMI CTAG 3 cut(s) 125, 135, 171
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 104, 139
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 5 cut(s) 153, 297, 324, 380, 474
Tru9I TTAA 5 cut(s) 153, 297, 324, 380, 474
TscAI CASTG 1 cut(s) 261
TseI GCWGC 4 cut(s) 77, 158, 647, 650
TspDTI ATGAA 2 cut(s) 608, 657
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 261
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 452
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 2 cut(s) 139, 531
XspI CTAG 3 cut(s) 125, 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.