Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

41685 .. 45178

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtttgcactgtcactgatcgtcaatcgcccatcaaccacgcctgcgctgccgcctgagaggagagacgcatcatacaaagcccagaccaatgaagaaaaagcaaaacctgaagccacgagactccacgaaccagtccggcaacacccgccattagtcgatgaggccagaagccatgattttcgttgggatcgacaatggttagtagtaaactacaaagggagggcatatactcaaagagttgagccaaagcctactttggttgaggtacagctgccaaatgaggcattcctagagaattgggaacctactaaaagctcttatctagtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgccgccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcaacttgtccgctttaatgcagcttcagaaactaggcctgtagatcatgaatatgctcctggacaccaaataatgttctccgatatgtatccatacatgctattgtctcaggtacctacaatcaatcaagctattggcattgcaggaactgagctaatcgacactcttaagaaaatccggtctgatgcaattttaagtccaacaggaaaacagcagggaagggtctactttgggcagcatcttgtttggagagactctgttgcaggaggtgtgaagggaaatgtcgtgaaggttggagatcttgtttatgtcctcaagatggtctcttctgctgatgaagcagcagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

277

Amino Acids

30.89

Weight (kDa)

6.1

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	2 cut(s)	419, 595
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	4 cut(s)	53, 149, 423, 493
AclWI	GGATC	1 cut(s)	198
AcuI	CTGAAG	3 cut(s)	132, 377, 492
AfaI	GTAC	3 cut(s)	270, 373, 597
AfiI	CCNNNNNNNGG	1 cut(s)	802
AflII	CTTAAG	1 cut(s)	650
AjnI	CCWGG	2 cut(s)	340, 541
AluBI	AGCT	7 cut(s)	274, 318, 440, 506, 614, 637, 830
AluI	AGCT	7 cut(s)	274, 318, 440, 506, 614, 637, 830
Alw26I	GTCTC	5 cut(s)	60, 115, 594, 729, 811
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	165, 518
ApeKI	GCWGC	6 cut(s)	49, 274, 503, 718, 824, 827
Asp718I	GGTACC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	419, 595
BauI	CACGAG	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	36, 261, 515, 730
BccI	CCATC	4 cut(s)	40, 340, 386, 796
BciT130I	CCWGG	2 cut(s)	342, 543
BciVI	GTATCC	1 cut(s)	582
BcoDI	GTCTC	5 cut(s)	60, 115, 594, 729, 811
BfaI	CTAG	5 cut(s)	293, 326, 470, 480, 516
BfmI	CTRYAG	1 cut(s)	522
BfrI	CTTAAG	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	582
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	8 cut(s)	50, 53, 275, 423, 504, 719, 825, 828
BlsI	GCNGC	8 cut(s)	51, 54, 276, 424, 505, 720, 826, 829
Bme1390I	CCNGG	2 cut(s)	342, 543
BmiI	GGNNCC	3 cut(s)	306, 421, 597
BmrFI	CCNGG	2 cut(s)	342, 543
BmsI	GCATC	5 cut(s)	80, 433, 455, 658, 730
BpuEI	CTTGAG	2 cut(s)	388, 782
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	342, 543
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	351, 355
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	3 cut(s)	48, 605, 624
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	36, 261, 515, 730
BshFI	GGCC	2 cut(s)	167, 520
BshNI	GGYRCC	2 cut(s)	419, 595
BsiSI	CCGG	2 cut(s)	139, 661
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	5 cut(s)	60, 115, 594, 729, 811
BsmBI	CGTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	167, 520
Bso31I	GGTCTC	1 cut(s)	811
Bsp143I	GATC	4 cut(s)	18, 190, 526, 781
BspACI	CCGC	4 cut(s)	53, 149, 423, 493
BspANI	GGCC	2 cut(s)	167, 520
BspCNI	CTCAG	3 cut(s)	49, 604, 625
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	306, 421, 597
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	2 cut(s)	419, 595
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	4 cut(s)	18, 190, 526, 781
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	342, 543
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	814
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	57, 427, 591, 633
BstF5I	GGATG	2 cut(s)	351, 355
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	21, 193, 529, 784
BstMAI	GTCTC	5 cut(s)	60, 115, 594, 729, 811
BstMBI	GATC	4 cut(s)	18, 190, 526, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 148, 821
BstNI	CCWGG	2 cut(s)	342, 543
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	340, 541
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	36, 261, 515, 730
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	167, 520
BtsCI	GGATG	2 cut(s)	351, 355
BtsIMutI	CAGTG	2 cut(s)	8, 14
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	269, 372, 596
CviAII	CATG	3 cut(s)	176, 530, 580
CviQI	GTAC	3 cut(s)	269, 372, 596
DdeI	CTNAG	4 cut(s)	57, 427, 591, 633
DpnI	GATC	4 cut(s)	20, 192, 528, 783
DpnII	GATC	4 cut(s)	18, 190, 526, 781
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
Eco147I	AGGCCT	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	811
Eco57I	CTGAAG	3 cut(s)	132, 377, 492
EcoRII	CCWGG	2 cut(s)	340, 541
EcoT22I	ATGCAT	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	179, 533, 583
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	3 cut(s)	175, 529, 579
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	8 cut(s)	50, 53, 275, 423, 504, 719, 825, 828
FokI	GGATG	2 cut(s)	358, 362
Fsp4HI	GCNGC	8 cut(s)	50, 53, 275, 423, 504, 719, 825, 828
FspBI	CTAG	5 cut(s)	293, 326, 470, 480, 516
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	8 cut(s)	50, 53, 275, 423, 504, 719, 825, 828
HaeIII	GGCC	2 cut(s)	167, 520
HapII	CCGG	2 cut(s)	139, 661
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	179, 533, 583
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	2 cut(s)	123, 737
HpaII	CCGG	2 cut(s)	139, 661
Hpy166II	GTNNAC	4 cut(s)	211, 374, 485, 709
Hpy188I	TCNGA	4 cut(s)	463, 511, 565, 667
Hpy188III	TCNNGA	3 cut(s)	530, 769, 799
Hpy8I	GTNNAC	4 cut(s)	211, 374, 485, 709
HpyAV	CCTTC	4 cut(s)	352, 696, 751, 766
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	6 cut(s)	8, 446, 503, 626, 671, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 148, 821
HpyF3I	CTNAG	4 cut(s)	57, 427, 591, 633
Hsp92II	CATG	3 cut(s)	179, 533, 583
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	599
Kzo9I	GATC	4 cut(s)	18, 190, 526, 781
LmnI	GCTCC	2 cut(s)	437, 544
Lsp1109I	GCAGC	4 cut(s)	36, 261, 515, 730
LweI	GCATC	5 cut(s)	80, 433, 455, 658, 730
MaeI	CTAG	5 cut(s)	293, 326, 470, 480, 516
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	4 cut(s)	20, 192, 528, 783
MboI	GATC	4 cut(s)	18, 190, 526, 781
MboII	GAAGA	2 cut(s)	107, 801
MflI	RGATCY	1 cut(s)	781
MluCI	AATT	2 cut(s)	298, 672
MlyI	GAGTC	2 cut(s)	117, 731
MmeI	TCCRAC	2 cut(s)	707, 757
MnlI	CCTC	8 cut(s)	54, 157, 216, 259, 277, 427, 743, 806
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	4 cut(s)	332, 498, 651, 677
MslI	CAYNNNNRTG	2 cut(s)	451, 534
MspA1I	CMGCKG	1 cut(s)	274
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	139, 661
MspR9I	CCNGG	2 cut(s)	342, 543
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	342, 543
MwoI	GCNNNNNNNGC	3 cut(s)	49, 148, 821
NdeII	GATC	4 cut(s)	18, 190, 526, 781
NlaIII	CATG	3 cut(s)	179, 533, 583
NlaIV	GGNNCC	3 cut(s)	306, 421, 597
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	583
PagI	TCATGA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	8 cut(s)	51, 54, 276, 424, 505, 720, 826, 829
PleI	GAGTC	2 cut(s)	117, 731
PpsI	GAGTC	2 cut(s)	117, 731
Psp6I	CCWGG	2 cut(s)	340, 541
PspGI	CCWGG	2 cut(s)	340, 541
PspN4I	GGNNCC	3 cut(s)	306, 421, 597
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	3 cut(s)	270, 373, 597
RsaNI	GTAC	3 cut(s)	269, 372, 596
RseI	CAYNNNNRTG	2 cut(s)	451, 534
SaqAI	TTAA	4 cut(s)	332, 498, 651, 677
SatI	GCNGC	8 cut(s)	50, 53, 275, 423, 504, 719, 825, 828
Sau3AI	GATC	4 cut(s)	18, 190, 526, 781
SchI	GAGTC	2 cut(s)	117, 731
ScrFI	CCNGG	2 cut(s)	342, 543
SfaNI	GCATC	5 cut(s)	80, 433, 455, 658, 730
SfcI	CTRYAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	451, 534
SmlI	CTYRAG	3 cut(s)	367, 650, 797
SmoI	CTYRAG	3 cut(s)	367, 650, 797
Sse9I	AATT	2 cut(s)	298, 672
SseBI	AGGCCT	1 cut(s)	520
SsiI	CCGC	4 cut(s)	53, 149, 423, 493
SspMI	CTAG	5 cut(s)	293, 326, 470, 480, 516
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	340, 541
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	4 cut(s)	159, 193, 449, 642
TasI	AATT	2 cut(s)	298, 672
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	2 cut(s)	55, 425
Tru1I	TTAA	4 cut(s)	332, 498, 651, 677
Tru9I	TTAA	4 cut(s)	332, 498, 651, 677
TscAI	CASTG	2 cut(s)	15, 21
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	6 cut(s)	49, 274, 503, 718, 824, 827
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	3 cut(s)	108, 546, 834
TspRI	CASTG	2 cut(s)	15, 21
Vha464I	CTTAAG	1 cut(s)	650
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	5 cut(s)	293, 326, 470, 480, 516
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.