Rmu_sc0003392.1_g000010

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003392.1
OG0001394
Physical Location & Seq
Forward (+)
40609 .. 42193
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003392.1_g000010.1.cds

Sequence Viewer

Length: 489 bp
atggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgctgccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcgacttgtccgctttaatgtagcttcagaaactaggcctgtagatactgaatatgctcctggacaccaaataatgttctccgatatgtatccatacatgctattgtctcaggtacctacaatcaatcaagctactggcattgcaggaactgagccaaccaacactcttaagaaaatccggtctgatgcagttttacgtccaacaggaaaacagcagggaagggtctactttgggcagcatcttgtttggagagactctgttacaggaggtgtgaagggaaatgtcgtgaaggttggagatcttgtttatgtcctcaagatggtctcttctgctaatgaagcagcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

162

Amino Acids

17.64

Weight (kDa)

6.1

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 139, 363
AciI CCGC 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 32, 147
AfaI GTAC 2 cut(s) 28, 252
AfiI CCNNNNNNNGG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 305
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 95, 161, 269, 485
AluI AGCT 4 cut(s) 95, 161, 269, 485
Alw26I GTCTC 3 cut(s) 249, 384, 466
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 4 cut(s) 77, 373, 479, 482
Asp718I GGTACC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 64, 385
BccI CCATC 2 cut(s) 41, 451
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 237
BcoDI GTCTC 3 cut(s) 249, 384, 466
BfaI CTAG 3 cut(s) 125, 135, 171
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 237
BglII AGATCT 1 cut(s) 436
BisI GCNGC 4 cut(s) 78, 374, 480, 483
BlsI GCNGC 4 cut(s) 79, 375, 481, 484
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 4 cut(s) 88, 110, 313, 385
BpuEI CTTGAG 2 cut(s) 43, 437
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 260, 279
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 64, 385
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 3 cut(s) 249, 384, 466
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 466
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 259, 280
BspLI GGNNCC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 277
BssMI GATC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 469
BstAFI CTTAAG 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 82, 246, 288
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 3 cut(s) 249, 384, 466
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 64, 385
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 287
Csp6I GTAC 2 cut(s) 27, 251
CviAII CATG 1 cut(s) 235
CviJI RGCY 6 cut(s) 95, 161, 175, 269, 292, 485
CviKI_1 RGCY 6 cut(s) 95, 161, 175, 269, 292, 485
CviQI GTAC 2 cut(s) 27, 251
DdeI CTNAG 3 cut(s) 82, 246, 288
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 32, 147
EcoRII CCWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 1 cut(s) 238
FaiI YATR 6 cut(s) 61, 192, 224, 232, 236, 447
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 234
FblI GTMKAC 2 cut(s) 139, 363
Fnu4HI GCNGC 4 cut(s) 78, 374, 480, 483
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 78, 374, 480, 483
FspBI CTAG 3 cut(s) 125, 135, 171
GluI GCNGC 4 cut(s) 78, 374, 480, 483
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 316
Hin1II CATG 1 cut(s) 238
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 1 cut(s) 392
HpaII CCGG 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 29, 140, 364
Hpy188I TCNGA 4 cut(s) 118, 166, 220, 322
Hpy188III TCNNGA 2 cut(s) 424, 454
Hpy8I GTNNAC 3 cut(s) 29, 140, 364
HpyAV CCTTC 4 cut(s) 7, 351, 406, 421
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 101, 281, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 3 cut(s) 82, 246, 288
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 92, 199
Lsp1109I GCAGC 2 cut(s) 64, 385
LweI GCATC 4 cut(s) 88, 110, 313, 385
MaeI CTAG 3 cut(s) 125, 135, 171
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 397
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 1 cut(s) 456
MflI RGATCY 1 cut(s) 436
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 2 cut(s) 362, 412
MnlI CCTC 3 cut(s) 82, 398, 461
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 2 cut(s) 153, 306
MslI CAYNNNNRTG 1 cut(s) 106
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 1 cut(s) 436
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 238
PceI AGGCCT 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 4 cut(s) 79, 375, 481, 484
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 2 cut(s) 28, 252
RsaNI GTAC 2 cut(s) 27, 251
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 306
SatI GCNGC 4 cut(s) 78, 374, 480, 483
Sau3AI GATC 1 cut(s) 436
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 198
SfaNI GCATC 4 cut(s) 88, 110, 313, 385
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 22, 305, 452
SmoI CTYRAG 3 cut(s) 22, 305, 452
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 1 cut(s) 148
SspMI CTAG 3 cut(s) 125, 135, 171
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 104, 139
TatI WGTACW 1 cut(s) 26
Tru1I TTAA 2 cut(s) 153, 306
Tru9I TTAA 2 cut(s) 153, 306
TseI GCWGC 4 cut(s) 77, 373, 479, 482
TspDTI ATGAA 1 cut(s) 489
Vha464I CTTAAG 1 cut(s) 305
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 2 cut(s) 139, 363
XspI CTAG 3 cut(s) 125, 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.