Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

32360472 .. 32363778

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1226500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGAAGGCAGGAGCAGCAGAAGCCATAGCCAAGGTCTCATCAATCTTCATATACCCAGTAAAATCATGCCGCGGAATTTCAGTGTCCCAAGCTCCTCTCACTCCAACTGGATTTCGATGGGATCGGCAGTGGTTAGTTGTAAACTCCAAGGGAAGGGCATATACTCAAAGAGTTGAACCAAAGCTTGCTTTGGTTGAGGTAGAGCTGCCAAATGAGGCGTTTGTCGAGGGTTGGGAACCTACCAAAAGCTCTTATCTAGTACTGAAAGCACCTGGCATGGATGTACTTAAGGTTTCATTGAGTGCACCACGAGAAAAAGCAGATGGGGTTTCCATGTGGGAATGGTCTGGTTCTGCATTAGATGAAGGAGATGCTGCGTCAAAATGGTTTTCAGATTATATTGGGAAACCCAGTCGACTTGTTCGCTTTAATACAGTTTCAGAAACTAGGCCTGTGGAACCCGAATACGCTCCAGGATACAAAACCATGTTCTCCGACAAGTATCCTTACATGCTAATATCTCAGGGATCAATGGATGCACTTAATCAGCTTCTGAGGGAACCCATACCAATTAACCGTTTTAGACCCAATATTCTTGTTGATGGTTGCGAACCATTTTCTGAGGACTTGTGGACAGAAATCAAAATAGACAAACTCACATTTCTCGGTGTCAAGCTATGCTCTCGTTGTAAGGTACCTACGATCAATCAAGACACTGGCATTGCAGGGCCTGAGCCAAATAACACTCTTAATAAAATCCGATCTGATACAGTTTTGCGTCCAACGCGAAAACAGCAAGGAAAGGTCTACTTTGGGCAGAACCTAGTCTGCAAAAGCTTTCTTACTGGGCAGAAGGGAAATGTCGTAACGGTTGGAGATCTGGTTTATGTCCTAAACAAAGTCTCTTCTACTGATGAAGCAGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

311

Amino Acids

34.41

Weight (kDa)

8.66

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	11 - 138	4e-38	MOSC N-terminal beta barrel domain
MOSC	PF03473	161 - 296	5.5e-21	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	697
AccI	GTMKAC	2 cut(s)	418, 810
AccII	CGCG	2 cut(s)	75, 790
AciI	CCGC	2 cut(s)	73, 75
AclWI	GGATC	2 cut(s)	132, 538
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	3 cut(s)	264, 288, 699
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	274, 475
AluBI	AGCT	7 cut(s)	95, 187, 208, 252, 553, 679, 840
AluI	AGCT	7 cut(s)	95, 187, 208, 252, 553, 679, 840
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	43, 910
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	132, 538
AlwNI	CAGNNNCTG	2 cut(s)	556, 734
AoxI	GGCC	2 cut(s)	452, 731
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	5 cut(s)	17, 208, 377, 923, 926
ApoI	RAATTY	1 cut(s)	78
Asp718I	GGTACC	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	697
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	29, 195, 364
BccI	CCATC	3 cut(s)	114, 320, 599
BciT130I	CCWGG	2 cut(s)	276, 477
BciVI	GTATCC	2 cut(s)	473, 516
BcoDI	GTCTC	2 cut(s)	43, 910
BfaI	CTAG	3 cut(s)	260, 450, 827
BfrI	CTTAAG	1 cut(s)	290
BfuI	GTATCC	2 cut(s)	473, 516
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	6 cut(s)	18, 73, 209, 378, 924, 927
BlsI	GCNGC	6 cut(s)	19, 74, 210, 379, 925, 928
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	276, 477
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	4 cut(s)	240, 462, 564, 699
BmrFI	CCNGG	2 cut(s)	276, 477
BmrI	ACTGGG	3 cut(s)	53, 408, 858
BmsI	GCATC	2 cut(s)	364, 529
BmuI	ACTGGG	3 cut(s)	53, 408, 858
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	33, 73, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	5 cut(s)	59, 115, 414, 724, 853
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	276, 477
BseDI	CCNNGG	3 cut(s)	33, 73, 150
BseGI	GGATG	2 cut(s)	289, 544
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	539, 548, 615, 726
BseNI	ACTGG	5 cut(s)	59, 115, 414, 724, 853
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	29, 195, 364
Bsh1236I	CGCG	2 cut(s)	75, 790
BshFI	GGCC	2 cut(s)	454, 733
BshNI	GGYRCC	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	43, 910
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	454, 733
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	124, 530, 705, 764, 880
BspACI	CCGC	2 cut(s)	73, 75
BspANI	GGCC	2 cut(s)	454, 733
BspCNI	CTCAG	4 cut(s)	538, 549, 616, 727
BspFNI	CGCG	2 cut(s)	75, 790
BspLI	GGNNCC	4 cut(s)	240, 462, 564, 699
BspPI	GGATC	2 cut(s)	132, 538
BspT107I	GGYRCC	1 cut(s)	697
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	5 cut(s)	59, 115, 414, 724, 853
BssECI	CCNNGG	3 cut(s)	33, 73, 150
BssMI	GATC	5 cut(s)	124, 530, 705, 764, 880
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	33, 150
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	276, 477
Bst4CI	ACNGT	4 cut(s)	439, 581, 775, 874
Bst6I	CTCTTC	1 cut(s)	913
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	4 cut(s)	525, 557, 624, 735
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	289, 544
BstFNI	CGCG	2 cut(s)	75, 790
BstKTI	GATC	5 cut(s)	127, 533, 708, 767, 883
BstMAI	GTCTC	2 cut(s)	43, 910
BstMBI	GATC	5 cut(s)	124, 530, 705, 764, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 23, 787, 796
BstNI	CCWGG	2 cut(s)	276, 477
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	274, 475
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	2 cut(s)	75, 790
BstV1I	GCAGC	3 cut(s)	29, 195, 364
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuI	GTATCC	2 cut(s)	473, 516
BsuRI	GGCC	2 cut(s)	454, 733
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	289, 544
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	90, 137, 717
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	2 cut(s)	556, 734
Cfr13I	GGNCC	1 cut(s)	731
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	2 cut(s)	369, 770
Csp6I	GTAC	3 cut(s)	263, 287, 698
CviAII	CATG	6 cut(s)	69, 280, 337, 490, 514, 930
CviQI	GTAC	3 cut(s)	263, 287, 698
DdeI	CTNAG	4 cut(s)	525, 557, 624, 735
DpnI	GATC	5 cut(s)	126, 532, 707, 766, 882
DpnII	GATC	5 cut(s)	124, 530, 705, 764, 880
Eam1104I	CTCTTC	1 cut(s)	913
EarI	CTCTTC	1 cut(s)	913
Eco130I	CCWWGG	2 cut(s)	33, 150
Eco147I	AGGCCT	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	274, 475
EcoT14I	CCWWGG	2 cut(s)	33, 150
ErhI	CCWWGG	2 cut(s)	33, 150
FaeI	CATG	6 cut(s)	72, 283, 340, 493, 517, 933
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	6 cut(s)	68, 279, 336, 489, 513, 929
FblI	GTMKAC	2 cut(s)	418, 810
Fnu4HI	GCNGC	6 cut(s)	18, 73, 209, 378, 924, 927
FokI	GGATG	2 cut(s)	296, 551
Fsp4HI	GCNGC	6 cut(s)	18, 73, 209, 378, 924, 927
FspBI	CTAG	3 cut(s)	260, 450, 827
GluI	GCNGC	6 cut(s)	18, 73, 209, 378, 924, 927
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	454, 733
HgaI	GACGC	2 cut(s)	369, 770
Hin1II	CATG	6 cut(s)	72, 283, 340, 493, 517, 933
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	185, 838
Hpy166II	GTNNAC	5 cut(s)	145, 308, 419, 636, 811
Hpy188I	TCNGA	7 cut(s)	397, 445, 499, 558, 625, 764, 769
Hpy188III	TCNNGA	1 cut(s)	713
Hpy8I	GTNNAC	5 cut(s)	145, 308, 419, 636, 811
HpyAV	CCTTC	3 cut(s)	150, 362, 850
HpyCH4III	ACNGT	4 cut(s)	439, 581, 775, 874
HpyCH4V	TGCA	5 cut(s)	308, 359, 542, 728, 834
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 23, 787, 796
HpyF3I	CTNAG	4 cut(s)	525, 557, 624, 735
Hsp92II	CATG	6 cut(s)	72, 283, 340, 493, 517, 933
KpnI	GGTACC	1 cut(s)	701
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	124, 530, 705, 764, 880
LmnI	GCTCC	3 cut(s)	14, 100, 478
Lsp1109I	GCAGC	3 cut(s)	29, 195, 364
LweI	GCATC	2 cut(s)	364, 529
MaeI	CTAG	3 cut(s)	260, 450, 827
MaeIII	GTNAC	1 cut(s)	868
MalI	GATC	5 cut(s)	126, 532, 707, 766, 882
MboI	GATC	5 cut(s)	124, 530, 705, 764, 880
MboII	GAAGA	2 cut(s)	40, 900
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	78, 573
MmeI	TCCRAC	4 cut(s)	131, 522, 809, 856
MnlI	CCTC	6 cut(s)	108, 193, 211, 223, 552, 619
MseI	TTAA	5 cut(s)	291, 432, 546, 576, 753
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	276, 477
MvaI	CCWGG	2 cut(s)	276, 477
MvnI	CGCG	2 cut(s)	75, 790
MwoI	GCNNNNNNNGC	4 cut(s)	17, 23, 787, 796
NdeII	GATC	5 cut(s)	124, 530, 705, 764, 880
NlaIII	CATG	6 cut(s)	72, 283, 340, 493, 517, 933
NlaIV	GGNNCC	4 cut(s)	240, 462, 564, 699
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	6 cut(s)	19, 74, 210, 379, 925, 928
Psp6I	CCWGG	2 cut(s)	274, 475
PspGI	CCWGG	2 cut(s)	274, 475
PspN4I	GGNNCC	4 cut(s)	240, 462, 564, 699
PspPI	GGNCC	1 cut(s)	731
PstNI	CAGNNNCTG	2 cut(s)	556, 734
PsuI	RGATCY	1 cut(s)	880
RsaI	GTAC	3 cut(s)	264, 288, 699
RsaNI	GTAC	3 cut(s)	263, 287, 698
SacII	CCGCGG	1 cut(s)	76
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	291, 432, 546, 576, 753
SatI	GCNGC	6 cut(s)	18, 73, 209, 378, 924, 927
Sau3AI	GATC	5 cut(s)	124, 530, 705, 764, 880
Sau96I	GGNCC	1 cut(s)	731
ScaI	AGTACT	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	276, 477
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	364, 529
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	78, 573
SseBI	AGGCCT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	73, 75
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	3 cut(s)	260, 450, 827
StuI	AGGCCT	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	274, 475
StyI	CCWWGG	2 cut(s)	33, 150
TaaI	ACNGT	4 cut(s)	439, 581, 775, 874
TaqI	TCGA	3 cut(s)	118, 228, 418
TasI	AATT	2 cut(s)	78, 573
TatI	WGTACW	2 cut(s)	262, 286
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	5 cut(s)	291, 432, 546, 576, 753
Tru9I	TTAA	5 cut(s)	291, 432, 546, 576, 753
TscAI	CASTG	3 cut(s)	90, 137, 724
TseI	GCWGC	5 cut(s)	17, 208, 377, 923, 926
TspDTI	ATGAA	4 cut(s)	40, 288, 381, 933
TspRI	CASTG	3 cut(s)	90, 137, 724
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	418, 810
XspI	CTAG	3 cut(s)	260, 450, 827
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.